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Dragan Spiridonov
0cc11ea05b
Eliminates the separate hypergraph.db file — all hypergraph data now lives in the unified .agentic-qe/memory.db alongside other QE tables. Fixes stale v3/ path references in governance shards. Adds user-facing hypergraph query surface via CLI (`aqe hypergraph stats/untested/impacted/gaps`) and MCP (`hypergraph_query` tool). Key changes: - coordinator + coordinator-hypergraph default path: hypergraph.db → memory.db - governance shards: v3/src/domains/ → src/domains/ (12 files + constitution) - init phase 06: now builds hypergraph tables during `aqe init --auto` - coordinator.index(): rebuilds hypergraph on every code_index MCP call - protocol: removed redundant buildHypergraphFromIndex (coordinator handles it) - shared code-index-extractor: async batched I/O, arrow/method/interface patterns - CLI handler: ensureInitialized guard, connection leak fix, path resolution - MCP handler: hypergraph_query tool with stats/untested/impacted/gaps queries - tool-scoping: hypergraph_query added to 5 agent roles - completions: bash/zsh/fish/powershell support for hypergraph subcommands - coordinator: publishes HypergraphDegraded event on init failure - 12 new tests for code-index-extractor Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>