### What problem does this PR solve?
- Clear stale pipeline IDs and generated data when updating documents
without `pipeline_id`.
- Support tree compilation results in pipeline workflows.
- Update compilation templates in place while preserving existing
template IDs.
- Improve duplicate-template validation messages.
### Type of change
- [x] Bug Fix (non-breaking change which fixes an issue)
- [x] New Feature (non-breaking change which adds functionality)
Co-authored-by: Jin Hai <haijin.chn@gmail.com>
