### What problem does this PR solve?
The table file parser (CSV/Excel) currently treats all columns
identically — every column is both vectorized (embedded in chunk text)
and stored as filterable metadata. There's no way for users to control
which columns should be searchable by semantic meaning versus which
should only be filterable attributes.
For example, when ingesting a news articles CSV with columns like title,
content, country, category, source, etc., the embedding includes
metadata fields like country: Brazil and source: Reuters in the chunk
text, which dilutes the semantic quality of the embedding without adding
retrieval value.
The RDBMS connector (MySQL/PostgreSQL) already supports content_columns
/ metadata_columns, but this capability was missing for file-based table
ingestion.
This PR adds column-level control (vectorize / metadata / both) for the
table file parser, following RAGFlow's existing patterns.
Backward compatible: Datasets without table_column_roles or with
table_column_mode: auto behave exactly as before (all columns = both).
### Type of change
- [x] New Feature (non-breaking change which adds functionality)
### What problem does this PR solve?
Fix: Some bugs
- Error during batch modification of metadata in the Knowledge Base
- Manually configured metadata is not displayed in search settings
### Type of change
- [x] Bug Fix (non-breaking change which fixes an issue)
### What problem does this PR solve?
Fix: Route error in dataset files page
### Type of change
- [x] Bug Fix (non-breaking change which fixes an issue)
This PR addresses three related GraphRAG reliability issues that
together allow long-running GraphRAG tasks (10+ hours of LLM extraction)
to be resumed after a crash or pause without re-doing completed work. It
builds on #14096 (per-doc subgraph cache) and extends the same idea to
the resolution and community-detection phases.
Fixes#14236.
## 1. Fix concurrent merge crash
Long GraphRAG runs would crash near the end of entity resolution with:
```
RuntimeError: dictionary keys changed during iteration
```
in `Extractor._merge_graph_nodes`. Two changes:
- `rag/graphrag/general/extractor.py`: snapshot `graph.neighbors(node1)`
via `list(...)` before iterating, so concurrent `add_edge` /
`remove_node` mutations on the shared `nx.Graph` cannot invalidate the
iterator. Also tracks each redirected neighbour in `node0_neighbors` so
a later merged node sharing the same external neighbour takes the
edge-merge branch instead of overwriting via `add_edge`.
- `rag/graphrag/entity_resolution.py`: serialize the merge step with a
dedicated `asyncio.Semaphore(1)`. `nx.Graph` is not thread-safe and
concurrent merges on overlapping neighbourhoods can produce incorrect
results even with the snapshot fix.
## 2. Don't wipe partial graph on pause
Previously the pause / cancel UI path called
`settings.docStoreConn.delete({"knowledge_graph_kwd": [...]}, ...)`,
destroying every subgraph, entity, relation, and graph row.
Re-triggering then started GraphRAG from scratch even though #14096 had
already added `load_subgraph_from_store`.
After main was merged in (which deleted `api/apps/kb_app.py` per
#14394), the pause path now lives on the new REST surface `DELETE
/v1/datasets/<id>/<index_type>`:
- `api/apps/services/dataset_api_service.py`: `delete_index` accepts a
`wipe: bool = True` parameter. When `False` the doc-store rows and
GraphRAG phase markers are left intact and only the running task is
cancelled. Default preserves historical behaviour.
- `api/apps/restful_apis/dataset_api.py`: parses `?wipe=false|0|no|off`
from the query string and forwards it.
- `web/src/utils/api.ts` + `web/src/services/knowledge-service.ts`:
`unbindPipelineTask` appends `?wipe=false` when explicitly false.
- The GraphRAG pause action in
`web/src/pages/dataset/dataset/generate-button/hook.ts` passes `wipe:
false` for `KnowledgeGraph`; raptor is unchanged.
**UX impact:** the pause icon next to a running GraphRAG task no longer
wipes graph data. The only path that still wipes is the explicit Delete
action in `GenerateLogButton` (trash icon behind a confirmation modal).
## 3. Phase-completion markers (`rag/graphrag/phase_markers.py`)
A small Redis-backed marker layer at
`graphrag:phase:{kb_id}:{resolution_done|community_done}` (7-day TTL).
`run_graphrag_for_kb` consults the markers on entry and skips phases
that already completed in a prior run. Markers are cleared automatically
when:
- new docs are merged into the graph (which invalidates prior resolution
and community results),
- `delete_index` wipes the graph, or
- `delete_knowledge_graph` is called.
Redis failures never block a run -- markers are an optimization, not a
gate.
## 4. Idempotent community detection
`extract_community` previously did `delete-then-insert` on
`community_report` rows; a crash mid-insert left the dataset with no
reports. Now report IDs are derived deterministically from `(kb_id,
community.title)`, the existing report IDs are snapshotted before
insert, new rows are written, then only stale rows are pruned. A failure
at any step leaves either the prior or the new report set intact --
never a partial mix.
## 5. Tunable doc-store insert pipeline
The GraphRAG insert loop in `rag/graphrag/utils.py` and the
`community_report` insert in `rag/graphrag/general/index.py` were both
hardcoded to `es_bulk_size = 4` and ran strictly sequentially. On a real
KB this meant 1077 chunks took ~21 minutes for a 100-chunk slice -- pure
round-trip overhead.
- New `insert_chunks_bounded()` helper in `rag/graphrag/utils.py`
batches inserts via a bounded `asyncio.Semaphore`. Same retry / timeout
semantics as the prior loop.
- Defaults: 64 docs per batch, 4 batches in flight (matches the regular
ingest pipeline in `document_service.py`). Tunable per-deployment via
`GRAPHRAG_INSERT_BULK_SIZE` and `GRAPHRAG_INSERT_CONCURRENCY`.
- Both `set_graph` and `extract_community` now use the helper.
This dropped the same 1077-chunk insert from minutes to seconds in local
testing without measurable extra pressure on Infinity (total in-flight
docs ≤ `BULK_SIZE × CONCURRENCY` = 256 by default).
## Tests
- `test/unit_test/rag/graphrag/test_merge_graph_nodes.py` (3 tests):
dense neighbourhood merge, neighbour-snapshot regression, concurrent
serialized merges.
- `test/unit_test/rag/graphrag/test_phase_markers.py` (4 tests): set/has
round-trip, kb-scoped clear, no-op on empty input, graceful Redis
failure.
-
`test/testcases/test_web_api/test_dataset_management/test_dataset_sdk_routes_unit.py`:
new `test_delete_index_wipe_flag_unit` covers `wipe=false` for both
GraphRAG and raptor on the new REST route, and confirms the default
still wipes and clears phase markers.
## Compatibility
- Backward compatible: tasks queued before this change behave
identically (default `wipe=true`, no markers expected).
- No schema/migration changes; all new state lives in Redis.
- New optional REST query param `wipe` on `DELETE
/v1/datasets/<id>/<index_type>`.
- New optional env vars `GRAPHRAG_INSERT_BULK_SIZE` and
`GRAPHRAG_INSERT_CONCURRENCY`; defaults preserve safe behaviour.
## Example of resume
Screenshot below shows a test resuming knowledge graph generation after
applying the concurrency fix and re-deploying.
<img width="521" height="677" alt="image"
src="https://github.com/user-attachments/assets/9ef0d405-cbb3-420d-a1a1-e51f3e7e9b7a"
/>
### Type of change
- [X] Bug Fix (non-breaking change which fixes an issue)
- [ ] New Feature (non-breaking change which adds functionality)
- [ ] Documentation Update
- [ ] Refactoring
- [ ] Performance Improvement
- [ ] Other (please describe):
### What problem does this PR solve?
Fix: The GraphRAG icon is not displaying.
### Type of change
- [x] Bug Fix (non-breaking change which fixes an issue)
### What problem does this PR solve?
## Summary
Fixed a bug where the **File Logs** tab in the dataset ingestion page
always showed "No logs" even after files were parsed successfully.
## Root Cause
Both the **File Logs** and **Dataset Logs** tabs on the frontend called
the same backend endpoint `/datasets/{dataset_id}/ingestions`. However,
the backend only queried `get_dataset_logs_by_kb_id`, which
hard-filtered records by `document_id == GRAPH_RAPTOR_FAKE_DOC_ID`
(dataset-level logs). As a result, real file-level logs were never
returned, causing the table to appear empty.
## Changes
### Backend
- **`api/apps/restful_apis/dataset_api.py`**
- Added two new query parameters to `list_ingestion_logs`:
- `log_type` — `"file"` or `"dataset"` (default: `"dataset"`)
- `keywords` — search keyword for filtering by document / task name
- **`api/apps/services/dataset_api_service.py`**
- Updated `list_ingestion_logs` signature to accept `log_type` and
`keywords`.
- Added conditional routing:
- When `log_type == "file"`, call
`PipelineOperationLogService.get_file_logs_by_kb_id`
- Otherwise, call
`PipelineOperationLogService.get_dataset_logs_by_kb_id`
- **`api/db/services/pipeline_operation_log_service.py`**
- Extended `get_dataset_logs_by_kb_id` with an optional `keywords`
parameter so dataset logs can also be searched.
### Frontend
- **`web/src/pages/dataset/dataset-overview/hook.ts`**
- Removed the separate API function switching (`listPipelineDatasetLogs`
vs `listDataPipelineLogDocument`).
- Unified both tabs to call `listDataPipelineLogDocument` with the new
`log_type` query parameter (`"file"` or `"dataset"`).
- Ensured `keywords` and filter values are passed through correctly.
## Behavior After Fix
| Tab | `log_type` | Returned Records | Searchable Field |
|---|---|---|---|
| File Logs | `file` | Real document-level logs | `document_name` (file
name) |
| Dataset Logs | `dataset` | GraphRAG / RAPTOR / MindMap logs |
`document_name` (task type) |
### Type of change
- [x] Bug Fix (non-breaking change which fixes an issue)
---------
Signed-off-by: noob <yixiao121314@outlook.com>
Co-authored-by: Wang Qi <wangq8@outlook.com>
Co-authored-by: Yingfeng Zhang <yingfeng.zhang@gmail.com>
### What problem does this PR solve?
Fix: The pipeline column header in the FileLogsTable is displaying
incorrectly.
### Type of change
- [x] Bug Fix (non-breaking change which fixes an issue)
### What problem does this PR solve?
Fix: Dataset: When configuring the "general chunk method," options such
as chunk size and parent-child slicing are unavailable.
### Type of change
- [x] Bug Fix (non-breaking change which fixes an issue)
---------
Co-authored-by: balibabu <assassin_cike@163.com>
### What problem does this PR solve?
Steps to re-produce (existing bug before API migration):
create a new dataset
upload a file
click on "General" in "Parse" column and then click on "switch or
configure ingestion pipeline"
click on "Settings" (at right of "Auto metadata")
click "Add" to add new metadata
click on "Save"
re-open "Settings" and the newly added metadata is not there
### Type of change
- [x] Bug Fix (non-breaking change which fixes an issue)
### What problem does this PR solve?
Before migration
Web API: POST /v1/document/change_parser
HTTP API: PATCH /api/v1/datasets/<dataset_id>/documents
After consolidation, Restful API
PATCH /api/v1/datasets/<dataset_id>/documents
### Type of change
- [x] Refactoring
### What problem does this PR solve?
Before migration
Web API: POST /v1/document/change_status
After consolidation, Restful API
POST /api/v1/datasets/<dataset_id>/documents/batch-update-status
### Type of change
- [x] Refactoring
### What problem does this PR solve?
Before migration
Web API: POST /v1/document/metadata/update
After migration, Restful API
PATCH /api/v2/datasets/<dataset_id>/documents/metadatas
### Type of change
- [x] Refactoring
### What problem does this PR solve?
Fix: Recall Test Page Metadata Not Displaying.
### Type of change
- [x] Bug Fix (non-breaking change which fixes an issue)
### What problem does this PR solve?
Before migration
Web API: POST /v1/document/update_metadata_setting
After consolidation, Restful API
PUT
/api/v1/datasets/<dataset_id>/documents/<document_id>/metadata/config
### Type of change
- [x] Refactoring
### What problem does this PR solve?
Fix: The number of chunks in the file list is not displayed.
### Type of change
- [x] Bug Fix (non-breaking change which fixes an issue)
### What problem does this PR solve?
Before consolidation
Web API: POST /v1/document/list
Http API - GET /api/v1/datasets/<dataset_id>/documents
After consolidation, Restful API -- GET
/api/v1/datasets/<dataset_id>/documents
### Type of change
- [x] Refactoring
Closes#9078
### What problem does this PR solve?
The `retrieval_test` endpoint in `chunk_app.py` never forwarded the
`highlight` request parameter to `retriever.retrieval()`, so the search
engine never produced highlight snippets. Additionally, the frontend
always rendered `content_with_weight` instead of preferring the
`highlight` field, and the CSS rule color `var(--accent-primary)` didn't
work because the variable stores an RGB triplet `(45,212,191)` requiring
the `rgb()` wrapper.
### Before
- Search page: displayed raw content_with_weight as a wall of plain
white text with no term highlighting, including markdown headings
rendered as literal text
- Retrieval testing page: showed `content_with_weight` in a plain `<p>`
tag, no `<em>` tags rendered, no highlight coloring
- Children chunks: when child chunks were consolidated into a parent via
`retrieval_by_children`, any highlight data from children was discarded
- TOC chunks: chunks fetched via `retrieval_by_toc` had no `highlight`
field, appearing as plain text while other chunks had highlights
**Retrieval testing**:
<img width="1449" height="1178"
alt="before-retrieval-no-highlight-cropped"
src="https://github.com/user-attachments/assets/5c6f5a5e-6c11-461a-bdb4-049d7dfb7a33"
/>
**Search**:
<img width="1378" height="711" alt="before-search-no-highlight-cropped"
src="https://github.com/user-attachments/assets/be7b5152-72ef-40da-a8fd-921e997ae7d3"
/>
### After
- Search page: displays the highlight field with search terms rendered
in teal/cyan color (`rgb(var(--accent-primary))`)
- Retrieval testing page: sends highlight: true in the request, uses
`HighLightMarkdown` component to render `<em>` tags with proper coloring
- Children chunks: highlights from child chunks are joined and preserved
on the parent
- TOC chunks: when other chunks have highlights, TOC-fetched chunks use
`content_with_weight` as a highlight fallback
**Retrieval testing**:
<img width="1410" height="1015" alt="05-retrieval-testing-results"
src="https://github.com/user-attachments/assets/f0cff8cf-0962-4320-b559-cd5037f622d2"
/>
**Search**:
<img width="1294" height="455" alt="03-search-highlight-results"
src="https://github.com/user-attachments/assets/a90e0e3e-3837-46be-8ddd-2412ff7cbc19"
/>
### Type of change
- [x] Bug Fix (non-breaking change which fixes an issue)
### What problem does this PR solve?
Consolidation WEB API & HTTP API for document upload
Before consolidation
Web API: POST /v1/document/upload
Http API - POST /api/v1/datasets/<dataset_id>/documents
After consolidation, Restful API -- POST
/api/v1/datasets/<dataset_id>/documents
### Type of change
- [x] Refactoring
### What problem does this PR solve?
1. Remove unused token related API
2. Fix typo
### Type of change
- [x] Refactoring
---------
Signed-off-by: Jin Hai <haijin.chn@gmail.com>
### What problem does this PR solve?
Fix: The file count in the file header did not change after uploading or
deleting files.
### Type of change
- [x] Bug Fix (non-breaking change which fixes an issue)
Co-authored-by: Yingfeng <yingfeng.zhang@gmail.com>
### What problem does this PR solve?
Fix: When creating a dataset, if no `chunk_method` is selected, there is
no indication that this is a required field.
### Type of change
- [x] Bug Fix (non-breaking change which fixes an issue)
### What problem does this PR solve?
Refactor: merge document.rename into document.update_document
### Type of change
- [x] Refactoring
<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
* **New Features**
* Added a unified document update API (PUT) supporting name, metadata,
parser/chunk settings, and status changes.
* **Breaking Changes**
* Legacy single-parameter rename endpoint removed; renames now require
dataset + document identifiers.
* `/list` now reads dataset id from a different query parameter.
* **Validation / Bug Fixes**
* Stricter meta_fields and parser-config validation; unauthenticated
requests return 401.
* **Frontend**
* UI now sends dataset id when saving document names.
* **Tests**
* Numerous unit and HTTP tests adjusted or removed to match new API and
validations.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
---------
Signed-off-by: Jin Hai <haijin.chn@gmail.com>
Co-authored-by: Jin Hai <haijin.chn@gmail.com>
Co-authored-by: MkDev11 <94194147+MkDev11@users.noreply.github.com>
Co-authored-by: mkdev11 <YOUR_GITHUB_ID+MkDev11@users.noreply.github.com>
Co-authored-by: mkdev11 <MkDev11@users.noreply.github.com>
Co-authored-by: Qi Wang <wangq8@outlook.com>
Co-authored-by: dataCenter430 <161712630+dataCenter430@users.noreply.github.com>
Co-authored-by: balibabu <cike8899@users.noreply.github.com>
### What problem does this PR solve?
Refactor: Remove unused API code
### Type of change
- [x] New Feature (non-breaking change which adds functionality)
<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
* **Style**
* Updated table header styling in dataset settings by removing a
hard-coded background color class, allowing the header to use default or
inherited component styling instead.
* **Refactor**
* Removed token management endpoints from the API service. Token
creation, listing, and removal functions are no longer available.
* Removed the statistics data endpoint from available API routes.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
### What problem does this PR solve?
Fix: Linter error message: Use 'const' instead.
### Type of change
- [x] Bug Fix (non-breaking change which fixes an issue)
<!-- This is an auto-generated comment: release notes by coderabbit.ai
-->
## Summary by CodeRabbit
* **Refactor**
* Updated variable declarations across form components, agent utilities,
memory management hooks, and data handling functions to enhance code
consistency and maintainability throughout the application codebase.
* **Style**
* Added ESLint suppressions to document intentional constant-condition
patterns in asynchronous event streaming operations.
<!-- end of auto-generated comment: release notes by coderabbit.ai -->
## Problem Description
When a user creates Dataset A using the **Tag parser** (for CSV/Excel
files with tag definitions), and then creates Dataset B, the Tag Sets
dropdown in Dataset B's Configuration page cannot display Dataset A.
### Steps to Reproduce
1. Create Dataset A with **Tag** as the chunking method
2. Upload a CSV file to Dataset A to generate tags
3. Create Dataset B
4. Navigate to Dataset B → Configuration → Tag Sets
5. **Expected**: Dataset A should appear in the dropdown
6. **Actual**: The dropdown is empty, Dataset A is not visible
---
## Root Cause Analysis
After thorough code review, **the original code logic is correct**. The
`chunk_method` field flows properly through the system:
### Data Flow
```mermaid
sequenceDiagram
participant Frontend
participant Pydantic
participant API
participant Database
Note over Frontend,Database: Creating a Tag Dataset
Frontend->>Pydantic: POST {chunk_method: "tag"}
Pydantic->>API: serialization_alias converts<br/>chunk_method → parser_id
API->>Database: INSERT {parser_id: "tag"}
Note over Frontend,Database: Querying Datasets
Frontend->>API: GET /api/v1/datasets
API->>Database: SELECT parser_id, ...
Database-->>API: Returns {parser_id: "tag"}
API->>API: remap_dictionary_keys()<br/>parser_id → chunk_method
API-->>Frontend: {chunk_method: "tag"}
Note over Frontend: Filter: x.chunk_method === 'tag'
Note over Frontend: ✅ Match found!
```
### Field Mapping
**Location**: `api/utils/api_utils.py:657-662`
```python
DEFAULT_KEY_MAP = {
"chunk_num": "chunk_count",
"doc_num": "document_count",
"parser_id": "chunk_method", # Maps DB field to API response
"embd_id": "embedding_model",
}
```
### Frontend Filtering (Already Correct)
**Location**:
`web/src/pages/dataset/dataset-setting/components/tag-item.tsx:24`
```typescript
const knowledgeOptions = knowledgeList
.filter((x) => x.chunk_method === 'tag') // ✅ Correct field
.map((x) => ({...}));
```
---
## Actual Issue
The most likely causes for the "bug" are:
1. **Browser Cache**: Old data cached before proper deployment
2. **Stale Data**: Datasets created before the code was fully deployed
3. **Container Not Restarted**: Changes not applied to running container
---
## Resolution
**No code changes are needed.** The existing code correctly:
1. Accepts `chunk_method` from frontend
2. Converts to `parser_id` via Pydantic serialization_alias
3. Stores in database as `parser_id`
4. Maps back to `chunk_method` in API response
5. Frontend filters by `chunk_method === 'tag'`
### What problem does this PR solve?
Fix: The chunk method of the knowledge base cannot be saved.
### Type of change
- [x] Bug Fix (non-breaking change which fixes an issue)
### What problem does this PR solve?
Fix: Fix the issue of errors when creating datasets.
### Type of change
- [x] Bug Fix (non-breaking change which fixes an issue)
Co-authored-by: Jin Hai <haijin.chn@gmail.com>
Co-authored-by: Yingfeng <yingfeng.zhang@gmail.com>
### What problem does this PR solve?
Fix: Metadata,chunk,dataset Related bugs
- metadata not show add button #13731
- chunk edit question style
- dataset modified chunk method bug
### Type of change
- [x] Bug Fix (non-breaking change which fixes an issue)
### What problem does this PR solve?
Fix: The retrieval_test interface is continuously requested when the
user enters a question. #13719
### Type of change
- [x] Bug Fix (non-breaking change which fixes an issue)
### What problem does this PR solve?
When using pagination in the Dataset file list or File Manager,
selecting row N on page 1 would incorrectly cause row N on page 2 (and
subsequent pages) to also appear selected. This is a state pollution
bug.
### Root Cause
TanStack React Table defaults to using array indices (0, 1, 2...) as
`rowSelection` keys. With server-side (manual) pagination, each page's
rows start from index 0, so a selection like `{2: true}` on page 1 also
matches index 2 on every other page.
### Fix
- Added `getRowId: (row) => row.id` to `useReactTable` in both
`DatasetTable` and `FilesTable`, so selection state is keyed by unique
document/file IDs instead of positional indices.
- Updated the `useSelectedIds` helper to support ID-based selection keys
while maintaining backward compatibility with index-based keys.
### Type of change
- [x] Bug Fix (non-breaking change which fixes an issue)
### Files Changed
| File | Change |
|------|--------|
| `web/src/pages/dataset/dataset/dataset-table.tsx` | Added `getRowId`
to table config |
| `web/src/pages/files/files-table.tsx` | Added `getRowId` to table
config |
| `web/src/hooks/logic-hooks/use-row-selection.ts` | Updated
`useSelectedIds` to handle ID-based selection |
### What problem does this PR solve?
1. Split dataset api to gateway and service, and modify web UI to use
restful http api.
2. Old KB releated APIs are commented.
### Type of change
- [x] Refactoring
---------
Co-authored-by: Yingfeng <yingfeng.zhang@gmail.com>
### What problem does this PR solve?
Fix: The dataset description should not be a required field.
### Type of change
- [x] Bug Fix (non-breaking change which fixes an issue)
### What problem does this PR solve?
1. Split dataset api to gateway and service, and modify web UI to use
restful http api.
2. Old KB releated APIs are commented.
### Type of change
- [x] Refactoring
### What problem does this PR solve?
1. Split dataset api to gateway and service, and modify web UI to use
restful http api.
2. Old KB releated APIs are commented.
### Type of change
- [x] Refactoring
### What problem does this PR solve?
min value and message force users to input a descript in datasets. Also
had a wrong error message.
### Type of change
- [x] Bug Fix (non-breaking change which fixes an issue)
### What problem does this PR solve?
- Unify top level pages structure
- Standardize locale language codes (BCP 47) and time zones (IANA tz)
> **Note:**
> Newly created user info brings non-standard default values `timezone:
"UTC+8\tAsia/Shanghai"` and `language: "English"`.
### Type of change
- [x] Refactoring
