Commit Graph

131 Commits

Author SHA1 Message Date
Ahmed Allam 10376b412b refactor(context): trim verbose comments 2026-07-26 19:26:51 +00:00
Ahmed Allam 95046a6cea fix(context): reject tool-output byte ceilings below the notice size
A configured tool_output_max_bytes smaller than the truncation notice
itself can't fit a bounded preview, so a persisted result could exceed the
ceiling. Enforce a config floor (ge=1024) so nonsensical values are
rejected at load time instead of being worked around at runtime.
2026-07-25 23:46:11 +00:00
Ahmed Allam aac59de1e5 fix(context): reserve notice budget so bounded output honors max_bytes
The head+tail slices could each take half of max_bytes, then the
truncation notice and its separators were appended on top, so the value
persisted to history could exceed the configured maximum. Reserve an
upper bound for the notice (and separators) out of the byte budget before
slicing so the whole joined result stays within max_bytes.
2026-07-25 23:06:40 +00:00
Ahmed Allam dab93bcc12 fix(context): clamp shell output cap and count byte-trimmed dropped lines
Treat tool_output_max_tokens as a ceiling so an explicit model-supplied
cap can't exceed it, and derive the truncation notice's dropped-line
count from the lines actually kept after the byte-trim pass. Also cast
the pygments fallback lexer so it satisfies the resolve_lexer return
type under the pre-commit mypy hook.
2026-07-25 22:32:56 +00:00
Ahmed Allam 3b8980c47b feat(context): bound per-tool output before it enters agent history
Cap the size of every tool result so a single verbose command (recursive
find, noisy scanner, full page dump) can't pin the conversation near the
model's context window for the rest of a scan.

- New ContextSettings config group with env-tunable caps.
- Default the SDK shell tools' max_output_tokens so exec_command /
  write_stdin truncate head+tail instead of returning unbounded output.
- Bound Strix's own FunctionTool/CustomTool results (line + UTF-8 byte
  head+tail preview with a truncation notice) and cap error strings.
2026-07-25 22:31:31 +00:00
yoni-at-strix cd8270c98b Sign in with a ChatGPT subscription for inference (#854)
Co-authored-by: Jonathan Singer <jonathansinger@Jonathans-MacBook-Pro.local>
Co-authored-by: Jonathan Singer <jonathansinger@Mac-3004.lan>
Co-authored-by: Ahmed Allam <ahmed39652003@gmail.com>
2026-07-24 15:41:19 -07:00
alex s ad27f0c67e docs(reporting): add CVSS calibration guidance to reduce severity inf… (#821)
* docs(reporting): add CVSS calibration guidance to reduce severity inflation

The create_vulnerability_report tool documents the cvss_breakdown format but
gives no guidance on choosing metric values, so findings are frequently
over-rated. Add a concise calibration block covering the most common
inflation mistakes: scoring scenarios that presuppose the attacker already
holds a stolen secret as unauthenticated (PR:N) criticals, using C:H/I:H for
single-user or read-only/enumeration impact, folding a chained worst case
into one vector, and ignoring adversary-in-the-middle or user-interaction
prerequisites.

* docs(reporting): drop 'one weakness per report' calibration bullet
2026-07-21 09:17:22 -04:00
alex s f9890a672d strip transfer encoding (#820)
* test(proxy): drop transfer encoding on replay

* test(proxy): drop transfer encoding on replay
2026-07-20 21:56:34 -04:00
Thejesh Reddy 599f7c7526 fix(proxy): recompute Content-Length when replaying a modified body (#816)
build_raw_request kept the Content-Length inherited from the captured
request, so replaying a modified body (repeat_request) emitted a request
whose declared length did not match the body — truncating the payload or
stalling the target. Drop any inherited Content-Length (case-insensitively)
and recompute it from the body actually being sent.

Adds tests covering a lengthened body, an emptied body, and the
no-inherited-header path.

Fixes #814

Co-authored-by: thejesh23 <thejesh23@users.noreply.github.com>
2026-07-20 21:43:49 -04:00
devin-ai-integration[bot] 96ca7e544d revert(proxy): drop overfit Caido reconnect/HTTPQL band-aids, keep serialization lock (#799)
Co-authored-by: Ahmed Allam <ahmed39652003@gmail.com>
2026-07-17 13:18:40 -07:00
devin-ai-integration[bot] e4548cb28c fix(proxy,tooling): serialize+reconnect Caido client, actionable HTTPQL errors, sandbox tool guidance (#794)
* fix(proxy,tooling): serialize+reconnect Caido client, actionable HTTPQL errors, sandbox tool guidance

Addresses the top recurring agent tool-call failures observed in telemetry:

- proxy: the shared Caido client had no locking or reconnect, so concurrent
  agent calls raced ("Transport is already connected") and a dead transport
  poisoned the rest of the run ("Connector is closed"/"Server disconnected").
  Add an asyncio lock + bounded reconnect in caido_api.call_with_client (sandbox
  path) and a scan-wide caido_lock in the run context that host-side proxy tools
  hold around every call. Deterministic errors are not retried.
- proxy: list_requests now returns Caido's exact parser message, echoes the
  offending query, and includes a corrected-syntax hint so agents self-correct
  instead of retrying a broken HTTPQL filter.
- shell/prompt: document that write_stdin requires a process started with
  tty=true; nudge toward writing Python to a file over deeply-nested one-liners;
  note the venv pre-installs common libs.
- agent-browser: distinguish daemon/connection failures (run doctor, don't loop)
  from malformed commands; invoke directly (no sh -c wrapper).
- containers: use POSIX '.' instead of the bashism 'source' in generated rc
  files (fixes 'sh: source: not found'); add file + xxd and pre-install
  requests/httpx/beautifulsoup4/lxml/pyjwt/cryptography in the sandbox venv.
- tests: cover proxy serialization/reconnect/no-retry and HTTPQL errors.

* fix(proxy): host-side reconnect, close stale clients, don't retry mutations

Addresses Greptile review on the reconnect logic:

- Host path had no reconnect: a dead shared context client (Caido restart /
  network blip) previously disabled proxy tools for the rest of the scan. Add
  SharedCaidoClient, a serialized reconnect-safe holder stored once per scan in
  the run context and shared across agents. On a dead transport it rebuilds via
  reconnect_caido, which re-selects the SAME Caido project (preserving captured
  traffic) instead of creating a new empty one.
- Don't repeat completed mutations: call_with_client / SharedCaidoClient.call
  take idempotent=. Reads retry once on reconnect; replay + scope
  create/update/delete heal the client but re-raise instead of risking a
  double-apply.
- Don't leak replaced clients: the stale client is aclose()d (best-effort) on
  every reconnect.
- Extend tests to cover close-on-reconnect, non-idempotent re-raise, and the
  SharedCaidoClient holder.

* fix(proxy): close replacement Caido client when project.select fails

Addresses Greptile P1: in reconnect_caido (and bootstrap_caido) a successful
connect() followed by a failing project.select()/create() discarded the
connected client without closing it, so a missing/unavailable project could
leak a transport on every retry. Close the client before re-raising.

---------

Co-authored-by: Alex Schapiro <bearsyankees@gmail.com>
2026-07-17 13:31:57 -04:00
devin-ai-integration[bot] 6786d24aca docs(tools): guide proportional wait_for_message timeouts (#784) 2026-07-16 07:16:12 -07:00
devin-ai-integration[bot] 993fd41f32 fix(tui): restore snappy sweep/progress animation frame rate (#759)
Co-authored-by: Ahmed Allam <ahmed39652003@gmail.com>
2026-07-13 14:21:28 -07:00
devin-ai-integration[bot] d6cefc176a docs(prompts): strengthen report guidance (severity, chaining, report structure) (#754)
Co-authored-by: Ahmed Allam <ahmed39652003@gmail.com>
2026-07-12 20:37:58 -07:00
devin-ai-integration[bot] a87bfb4881 fix(reporting): require advisory_cvss for dependency findings + add SCA TUI renderer (#753)
Co-authored-by: Ahmed Allam <ahmed39652003@gmail.com>
2026-07-12 17:31:49 -07:00
alex s 4537f33f11 Add dependency reporting fields (#751) 2026-07-12 15:30:33 -04:00
Sadovoi Grigorii dc8b790cf8 fix: avoid note ID collisions (#630) 2026-07-02 22:54:44 -04:00
Ahmed Allam f7e3af49bd Strip all images from session on vision-rejection, not just the latest (#553) 2026-06-09 02:48:30 -07:00
0xallam 8414c59557 Strip narrative comments and module/helper docstrings
Five rounds of sweep across the tree. Net ~544 lines removed.

Removed:
- Section-divider banners and one-line section labels (# Display
  utilities, # ----- list_requests -----, # CVSS breakdown, etc.).
- Module-level prose docstrings on internal modules. Kept one-line
  summaries; trimmed multi-paragraph narration about SDK/Strix
  responsibility splits, cache strategies, three-source precedence.
- Internal-helper docstrings that just restate the function name —
  caido_api helpers (caido_url, get_client, view_request, etc.),
  settings-class one-liners (LLMSettings, RuntimeSettings, ...),
  UI helper docstrings.
- Args/Returns blocks on non-LLM-facing internal helpers
  (build_strix_agent, render_system_prompt, create_or_reuse,
  bootstrap_caido) — kept only the genuinely non-obvious params.
- Internal-history phrasing — "Mirrors main-branch shape",
  "pre-SDK harness", "previous lookup matched no attribute".
- Narrative comments inside function bodies that explained what the
  next line does, design rationale obvious from the surrounding code,
  or "we used to..." asides.
- Trailing periods on every error-string literal across the tool tree.
- Duplicated roundtripTime quirk comment (kept the LLM-facing copy in
  tools/proxy/tools.py).

Kept (every one names an upstream bug, vendored-code provenance, or
non-obvious data quirk):
- core/runner.py: SDK replay-with-empty-initial-input + on_agent_end
  lifecycle gap.
- runtime/docker_client.py: VERBATIM COPY block of the upstream
  _create_container body, pinned to SDK v0.14.6.
- runtime/session_manager.py: NO_PROXY for agent-browser CDP loopback.
- tools/proxy/caido_api.py: generated-pydantic Request.raw quirk,
  replay double-history pitfall.
- tools/proxy/tools.py: Caido roundtripTime=0 quirk for proxy
  captures.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-26 14:02:40 -07:00
0xallam 054eedf53f Tighten tool surface consistency
Four passes of audit-and-patch on the tool surface, condensed.

Tool API shape:
- Todo tools collapse to a single list-based form (one arg per tool,
  always a list, no dual-mode validator). Result-field names line up
  across the family — created_count / updated_count / marked_count /
  deleted_count, and _mark returns a single "marked" key plus the new
  status instead of marked_done / marked_pending.
- list_notes splits the overloaded total_count into filtered_count
  (matches) and total_count (grand total), matching list_todos. All
  three notes mutations now echo total_count and note_id.
- finish_scan drops the machine-code error strings; a single human
  "error" key carries the reason on every failure path.
- scope_rules delete echoes a message so the renderer's success
  branch has something to surface.

Failure-key unification: every tool now uses {"success": False,
"error": "..."} on failure paths. Touched thinking, web_search,
reporting, and finish. Trailing periods on error strings swept clean
across the whole tool tree.

Tool prompts (docstring re-imports vs main):
- create_vulnerability_report re-imports the CWE reference catalog,
  multi-part fix rules, fix_before/fix_after PR-suggestion mechanics,
  the COMMON MISTAKES list, the informational-vs-actionable
  distinction, and file-path examples.
- web_search re-imports concrete example queries.
- list_sitemap docstring fixed hasDescendants -> has_descendants
  (the camelCase reference never matched our snake_case schema).
- create_agent.skills description "Comma-separated" -> "List of".
- factory.py module docstring no longer claims there's no runtime
  skill-loading tool. agents_graph module docstring lists stop_agent.
- system_prompt nudges loading the matching skill before guessing
  payloads or syntax from memory.

TUI:
- proxy_renderer was reading stale field names from the pre-SDK
  schema (requests / total_count / statusCode / matches /
  showing_lines); now reads entries / page_info / status_code / hits
  / page+total_lines. Three proxy operations were rendering empty
  before this.
- Idle-pane placeholder text trimmed to "Loading...".

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-26 12:16:47 -07:00
0xallam 763df86f17 Collapse todo tools to a single list-based form
create_todo / update_todo / mark_todo_done / mark_todo_pending /
delete_todo used to accept either a single-item form (title, todo_id,
…) or a bulk form (todos, updates, todo_ids), reject the call if the
agent set both, and explain the rule in the docstring. The agent kept
tripping the validator. Drop the single-item form everywhere — each
tool now takes one list arg. Single calls just pass a one-item list.

While the API was being reshaped, line the result schemas up:
created_count replaces the lone "count", _mark returns a single
"marked" key plus new_status instead of marked_done / marked_pending,
and list_todos splits the overloaded total_count into filtered_count
(matches) and total_count (grand total) so a filtered call no longer
hides the real size.

Docstrings now spell out each item's fields with required/optional
and the legal status / priority values, plus a worked example.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-25 23:51:08 -07:00
0xallam 867a0c81fc Document the SDK-provided tools as stub dirs under strix/tools/
Every agent-facing tool now has a corresponding directory: the
strix-implemented ones already do, and the SDK-provided ones
(exec_command/write_stdin shell, apply_patch, view_image) plus the
sandbox-CLI agent-browser get README-only stubs. Each README names the
implementation source, where the tool is wired up, the strix-specific
config it inherits, and the skill that teaches its usage. Listing
strix/tools/ now gives a new reader the full agent toolset at a glance.

The stub dirs intentionally have no __init__.py — they are not Python
packages, just documentation. Nothing in the codebase auto-discovers
strix.tools.* as packages (all imports are explicit), so the stubs
cannot accidentally affect runtime behavior.
2026-05-25 22:23:14 -07:00
0xallam a451766d97 Restore load_skill + surface skill catalog in system prompt
Main's load_skill tool was deleted during the SDK migration along
with the prompt-mutation pattern it relied on. Re-add the capability
without the mutation: load_skill(skills=[...]) now returns the skill
markdown bodies as a tool result, so the content lands in conversation
history as in-context reference rather than as patched-in system
prompt content. Same source of truth (load_skills + skill files),
same validation (validate_requested_skills) as create_agent.

Tool result format is plain markdown (## Skill: <name> headers joined
with ---), not the <specialized_knowledge> XML wrapping used at
agent-build time. The XML framing was deliberately reserved for
prompt-level privileged context; tool-loaded skills are honestly
labelled as just-fetched reference material.

Close the discovery loop by surfacing the full skill catalog in the
system prompt. Without it the model could only guess skill names —
discovering them via validation errors on misses. Now every agent
sees a categorised <available_skills> block right after the
<specialized_knowledge> block with a short hint pointing at
create_agent / load_skill.

Skills module: factored _iter_user_skill_files() so get_all_skill_names
(set, for validation) and get_available_skills (dict by category,
for the prompt) share one source of truth on what counts as
user-selectable. Internal categories (scan_modes, coordination) stay
excluded from both.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-25 15:02:24 -07:00
0xallam fdd8b71f4e Stop web_search from leaking upstream details into tool results
Failure messages were echoing the raw requests-exception text — for an
empty query the model would see "API request failed: 400 Client Error:
Bad Request for url: https://api.perplexity.ai/chat/completions" and
learn the upstream URL, the HTTP status, and the literal word "API"
none of which it has any use for or right to. Same pattern in every
except branch: KeyError leaked internal field names, generic exceptions
leaked library exception text, etc.

Two fixes:

- Pre-flight reject empty/whitespace queries so the trivial misuse case
  never hits the network at all and gets a "Query cannot be empty."
  result immediately.

- Sanitize every failure path: split RequestException into HTTPError
  (4xx → "rejected the query — refine and retry", 5xx → "service
  unavailable"), Timeout, ConnectionError, response-shape (KeyError /
  IndexError / ValueError), and a generic catch-all. Each path returns
  a short actionable message and logs the full traceback via
  logger.exception so operator-side observability is preserved. The
  model sees no URLs, no status codes, no library exception text.

While in here: the missing-API-key message keeps the env var name
because that's operator-actionable, and the dead "results": [] field
the failure paths used to carry is dropped (success path never had it
either, so the shape was inconsistent).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-25 02:13:43 -07:00
0xallam 4f62adf820 Agents graph sweep: status taxonomy, stop_agent safety, skill validation
- view_agent_graph status summary now derives buckets from the canonical
  Status literal via get_args, so adding a new status in core.agents
  auto-flows into the summary. The previous hardcoded five-bucket list
  silently omitted "failed" — buckets stopped summing to total whenever
  an agent failed.

- stop_agent rejects targets that are already in a terminal status
  (completed / stopped / crashed / failed) with a model-readable error
  pointing at view_agent_graph and send_message_to_agent. request_stop
  unconditionally overwrites status, so without this guard calling
  stop_agent on a completed agent erased the "completed" history.

- StopAgentRenderer added — was falling back to the generic key/value
  renderer; the rest of the agents_graph tools have purpose-built ones.

- agent_finish root-rejection payload trimmed from
  {success, agent_completed, error, parent_notified} to {success, error}.
  The lifecycle gate only reads success+agent_completed and they were
  always False/False on this branch, so the extra fields were dead weight.

- wait_for_message renames its top-level outcome field from "status" to
  "wait_outcome" — "status" overloaded with the coordinator's agent
  status literal (which also has "stopped" as a value, different
  meaning). Redundant "agent_waiting" boolean dropped (true iff
  wait_outcome == "waiting"). Consumer at factory._wait_tool_parked
  updated to match.

- send_message_to_agent now refuses self-send with a pointer at think /
  agent_finish / finish_scan instead of looping a message into your
  own session.

- SendMessageToAgentRenderer read args.get("agent_id") but the tool's
  param is target_agent_id, so the TUI silently never showed the target.
  Fixed.

- Restored skill validation lost during the SDK migration: skills
  module re-exports get_all_skill_names and validate_requested_skills
  (excluding internal scan_modes/coordination categories from the
  user-selectable set). create_agent now validates skills before
  spawning instead of silently accepting unknown names.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-25 01:35:57 -07:00
0xallam 136e2e6ac2 Document HTTPQL footguns on list_requests
Three gotchas that bite the model once per scan if uncovered:

- HTTPQL has no NOT operator. Naive `NOT req.path.cont:"/static"`
  is a parse error. The negated-operator variants (`ne`, `ncont`,
  `nlike`, `nregex`) are the only way to negate.
- Strings must be quoted, integers must not. `resp.code.eq:"200"`
  parses as a string-vs-int mismatch.
- A bare quoted literal searches both `req.raw` and `resp.raw` —
  useful primitive we never surfaced.

All three land in the model-visible tool description.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-25 00:29:27 -07:00
0xallam a51e7820f9 Restore sitemap tools + unify proxy I/O contract
Re-add list_sitemap and view_sitemap_entry from main, ported to the
new caido-sdk-client layout via raw GraphQL queries (the typed SDK
doesn't expose sitemap operations, but the Caido server still
supports sitemapRootEntries / sitemapDescendantEntries / sitemapEntry).
Wired through caido_api (sandbox-importable helpers), the host-side
@function_tool wrappers, factory _BASE_TOOLS, the system prompt, the
python skill doc, and the public proxy docs.

While threading these through, lock down the output contract across
every proxy tool so the model sees one consistent shape:

- All tools wrap success/failure in {"success": bool, "error"?: str}
- Canonical field names: status_code, length, roundtrip_ms (omitted
  when 0), is_tls, has_descendants. snake_case everywhere on output;
  camelCase stays only on the input side where it's the GraphQL
  schema.
- repeat_request now returns a structured response that matches
  list_requests' response_summary shape (parse_raw_response parses
  the raw bytes into status_code / length / headers / body), with
  body capped at 8KB and a body_truncated flag so the model knows
  when to fetch the full body via view_request.
- RepeatRequestRenderer was reading non-existent top-level keys
  (status_code, response_time_ms, body) and silently displaying
  nothing useful — now reads the structured response shape.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-25 00:23:46 -07:00
0xallam 5921fec16c Proxy tool sweep: drop send_request, fix Caido SDK gotchas
send_request was a thin wrapper over the Caido Replay API that the model
could replicate with a one-liner `curl` via exec_command. The sandbox's
HTTP_PROXY env captures all such traffic for free, so the tool was
adding bugs (duplicate dispatch, dropped responses) without adding
capability. Removed across factory, tools module, sandbox-importable
caido_api helper, TUI renderer, prompt template, skill doc, and public
docs. repeat_request stays — it operates on captured request IDs with
structured modifications, which curl can't replicate cleanly.

Three caido-sdk-client workarounds that were hitting us through both
send_request and repeat_request:

- replay_send_raw used to pass CreateReplaySessionFromRaw to
  sessions.create(), which seeds a stored entry server-side, then
  called send() — producing two history rows per call. Empty-create +
  send produces one dispatched request.
- The same helper read result.entry.response_raw, an attribute that
  doesn't exist on ReplayEntry, so response bytes were silently
  dropped. Fixed to walk result.entry.response.raw with proper None
  guards.
- get_request_with_client passed include_request_raw / include_response_raw
  based on the requested part, but the SDK's generated pydantic models
  declare raw as required even though the GraphQL fragment makes it
  conditional via @include. Passing False crashed view_request with a
  pydantic validation error. Always request both raw bodies; the caller
  picks which to surface.

Also wrapped replay.send() in asyncio.wait_for(30s) so a stalled Caido
dispatch (notably loopback targets that don't route cleanly through the
sandbox proxy) fails fast with a model-readable error instead of
hanging the agent until the function_tool 120s budget expires.

Finally, list_requests now omits the roundtrip_ms field when Caido
reports 0 — proxy-captured unscoped traffic consistently reports 0
while scoped/replay traffic carries real measurements, so the absence
of the field is now informative ("Caido didn't measure this") rather
than misleading ("this request took 0ms").

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-24 19:16:06 -07:00
0xallam 940319f28a Align note IDs with todo IDs (6-char hex)
Notes generated 5-char IDs via a 20-try collision loop while todos
generated 6-char IDs in one shot. Mixed widths across the agent's
view made the two tools look unrelated. Match todo's shape — same
length, same one-shot generation. Collision retry is unnecessary at
scan-scale (a few hundred items vs 16^6 keys).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-24 18:10:57 -07:00
0xallam bdc3c5470e Tighten todo + think tool contracts
Reject ambiguous calls in todo tools that previously combined the
single-target params and the bulk-array param (e.g. create_todo with
both `title` and `todos` would silently create N+1 items). Each tool
now errors with a mode-specific hint pointing the model at the
appropriate form. Also drop the meaningless char-count from `think`'s
success message — the model already knows what it wrote.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-24 16:58:09 -07:00
0xallam c4d76d72bc Simplify Python proxy automation 2026-04-27 00:21:54 -07:00
0xallam af826e1281 refactor: consolidate run state layout 2026-04-26 15:01:35 -07:00
0xallam 0a5be6be3f chore: remove generated migration docs 2026-04-26 14:36:58 -07:00
0xallam 629ea60b02 refactor: reorganize core report and tui modules 2026-04-26 14:28:50 -07:00
0xallam c163ef882b refactor: remove custom llm provider layer 2026-04-26 14:04:32 -07:00
0xallam bd40884fcf Simplify SDK-native orchestration 2026-04-26 11:30:00 -07:00
0xallam dc03f1f4ed Use shared agent persistence files 2026-04-26 09:30:13 -07:00
0xallam 5ec1e0786f Simplify SDK agent orchestration 2026-04-26 09:25:47 -07:00
0xallam 671c69327b fix(persistence): snapshot resume-instruction + persist notes to disk
Two follow-ups from the post-fix audit:

**#1 critical**: ``orchestration/scan.py`` injects the user's new
``--instruction`` into the root's bus inbox via ``bus.send`` on resume,
but ``send`` is one of the deliberately-not-snapshotted high-frequency
mutations. A SIGKILL between that send and the model's first turn
would silently drop the user's new directive. Force a snapshot
immediately after the inject — that's the one specific message we
can't afford to lose, while leaving general ``send`` traffic
unsnapshotted as designed.

**Notes persistence**: ``strix/tools/notes/tools.py`` now mirrors the
todo pattern. ``_notes_storage`` writes through to
``{run_dir}/notes.json`` after every create/update/delete via the
same atomic-tempfile + ``Path.replace`` flow. New
``hydrate_notes_from_disk(run_dir)`` is wired in ``run_strix_scan``
alongside ``hydrate_todos_from_disk`` so a resumed scan recovers the
exact note set the prior process saw, including ``wiki``-category
notes.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-26 01:09:56 -07:00
0xallam 5fd2a64562 fix(persistence): close all 9 gaps from the resume audit
Three critical correctness fixes + six TUI/audit/UX fixes from the
parallel-agent audit. All changes verified by an end-to-end smoke
that builds, persists, and re-hydrates state across two simulated
process boundaries.

Critical (resume integrity):

1. ``bus.cancel_descendants_graceful`` now calls ``_maybe_snapshot``
   after mutating the ``stopping`` set. Previously, a process crash
   between user-initiated graceful-stop and the next finalize lost
   the stop signal — respawned agents would run forever instead of
   exiting. ``_respawn_subagents`` also gains a guard that skips
   agents in ``stopping`` so a previously-cancelled agent is not
   resurrected on resume.

2. ``Tracer.hydrate_from_run_dir`` now **raises** on corrupt
   ``vulnerabilities.json`` instead of swallowing the exception. The
   prior behaviour silently reset ``vulnerability_reports`` to empty,
   so the next ``add_vulnerability_report`` would allocate ``vuln-0001``
   and overwrite the prior MD on disk — silent data loss.

3. ``--instruction`` passed on resume now reaches the model. The CLI
   captures whether the user explicitly passed an instruction
   (``args.user_explicit_instruction``) before ``_load_resume_state``
   loads the persisted one. ``run_strix_scan`` reads
   ``scan_config["resume_instruction"]`` and, on resume, sends the
   new instruction to root's bus inbox before calling
   ``run_with_continuation`` (which uses ``initial_input=[]`` for SDK
   replay). The inject filter surfaces it on the next turn.

4. ``--resume X`` errors loudly when ``scan_state.json`` exists but
   ``bus.json`` doesn't. Previously this silently fresh-started in
   the same dir, confusing the user who explicitly asked to resume.

TUI / audit / UX:

5. ``Tracer.hydrate_from_run_dir`` now reads ``bus.json`` too and
   pre-populates ``tracer.agents`` from the snapshot's ``statuses`` /
   ``names`` / ``parent_of``. Before this, the TUI tree on resume
   showed only currently-running agents; completed/crashed children
   from the prior run were invisible.

6. ``Tracer.hydrate_from_run_dir`` also seeds ``self._llm_stats`` from
   ``bus.stats_live + bus.stats_completed`` so the resume's footer
   shows cumulative tokens / requests across the prior run plus the
   resume segment, instead of resetting to zero.

7. ``Tracer.save_run_data`` now also writes ``run_metadata.json``
   (start_time, run_id, run_name, targets, status), and
   ``hydrate_from_run_dir`` restores ``start_time`` from it. Prior
   behaviour reset start_time to ``now()`` on every Tracer init,
   breaking the final report's duration calc on resumed scans.

8. Per-agent todos persist to ``{run_dir}/todos.json`` (atomic write
   on every CRUD). ``hydrate_todos_from_disk`` (called from
   ``run_strix_scan``) reloads them so respawned subagents find
   their lists intact. Previously, the module-level
   ``_todos_storage`` was lost on every process restart.

9. ``_load_resume_state`` validates each ``cloned_repo_path`` from
   the persisted ``scan_state.json`` still exists on disk. Previously
   a deleted clone dir would let the resume proceed with an empty
   source tree, with agents silently scanning nothing.

Bonus: ``bus.finalize`` no longer pops ``parent_of`` and ``names``
for finalized agents. Routing protection (don't accept ``send`` to
finalized agents) comes from the ``statuses[id]`` terminal-state
check in ``send`` itself, so dropping those keys was overzealous and
made completed children invisible in ``view_agent_graph`` and the
TUI tree.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-26 00:57:52 -07:00
0xallam d538acf66b feat(orchestration): always-on resume across the agent graph
A scan that crashes or is stopped can now be resumed by re-invoking
``strix`` with the same ``--run-name``. Resume is implicit — presence
of ``{run_dir}/bus.json`` triggers it. To force a fresh start, delete
the run dir.

What survives a process restart with the same scan_id:

  * Root agent's LLM history — already worked (root SDK SQLiteSession).
  * Every non-terminal subagent's LLM history — new. ``create_agent``
    now opens SQLiteSession(session_id=child_id,
    db_path={run_dir}/sessions/{child_id}.db) per child and passes it
    to ``run_with_continuation``.
  * Bus topology — new. ``AgentMessageBus`` gains snapshot/restore/
    _maybe_snapshot async methods plus a ``metadata`` field that holds
    per-agent {task, skills, is_whitebox, scan_mode, diff_scope}.
    ``register``, ``finalize``, ``park``, and ``mark_llm_failed`` each
    call ``_maybe_snapshot`` to atomically persist the bus to
    {run_dir}/bus.json (tempfile + Path.replace).
  * Vulnerability reports — new. ``ScanArtifactWriter._write_
    vulnerabilities`` now also writes ``vulnerabilities.json``
    (atomic). ``Tracer.hydrate_from_run_dir`` reads it on resume so
    new vuln-NNNN ids don't collide with prior on-disk files.

What does not survive: the sandbox container itself (fresh per
process), so ``/workspace/scratch`` and Caido state are lost.
``/workspace/sources`` re-mounts from the host so source code is
unchanged.

``orchestration/scan.py:run_strix_scan`` does the actual resume:
  1. Resolve run_dir up front; if bus.json exists it's a resume.
  2. Acquire {run_dir}/.lock (fcntl.flock) so a second strix process
     can't run concurrently on the same scan_id.
  3. ``bus.set_snapshot_path(...)``, ``tracer.hydrate_from_run_dir()``.
  4. On resume: load + bus.restore, find root_id from snapshot (the
     agent with parent_of[id] is None), spawn the sandbox, skip the
     root's bus.register (already in snapshot).
  5. ``_respawn_subagents`` walks every agent with status in
     running/waiting/llm_failed: reopens its SQLiteSession, rebuilds
     the child agent via the captured factory, builds run config /
     context, asyncio.create_task the run with initial_input=[] so
     the SDK replays from session. Per-child failure (missing/corrupt
     DB, factory raises) finalizes that child as crashed and continues.
  6. Open root SQLiteSession at the same path, run the root with
     initial_input=[] on resume (or the formatted root task on a
     fresh run), and let SDK replay drive the next turn.
  7. ``finally``: close every per-agent session, take a final
     snapshot, tear down sandbox, release the lock.

HARNESS_WIKI.md updated with the new run-dir layout (sessions/,
bus.json, vulnerabilities.json, .lock) and the resume contract.

Net: +500 LoC across 7 files. No new deps.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-26 00:29:37 -07:00
0xallam 81703e286f refactor(notes): drop disk persistence + shared-wiki prose
The notes tool no longer touches disk. ``_notes_storage`` lives in
memory for the lifetime of one scan process, shared across every
agent in that process via the existing RLock. Process exit clears
the lot — no notes.jsonl event log, no wiki/<slug>.md Markdown
rendering, no replay-on-startup hydration.

Removed ~10 internal helpers (``_get_run_dir``,
``_get_notes_jsonl_path``, ``_append_note_event``,
``_load_notes_from_jsonl``, ``_ensure_notes_loaded``,
``_persist_wiki_note``, ``_remove_wiki_note``,
``_get_wiki_directory``, ``_get_wiki_note_path``,
``_sanitize_wiki_title``) plus the ``_loaded_notes_run_dir`` module
state, ``wiki_filename`` per-note field, and the ``OSError`` branches
that only existed for the wiki write path.

The ``wiki`` category is preserved as a free-form long-form bucket;
it just no longer has any special persistence behaviour.

Skill prompts scrubbed of every "shared wiki memory" / "repo wiki" /
"append a delta before agent_finish" instruction:
``coordination/source_aware_whitebox.md``,
``custom/source_aware_sast.md``,
``scan_modes/{quick,standard,deep}.md``, plus the WHITE-BOX TESTING
block in ``agents/prompts/system_prompt.jinja``.

HARNESS_WIKI.md updated to drop the wiki-as-shared-knowledge-base
description, the per-run output-tree references to ``notes/notes.jsonl``
and ``wiki/{note_id}-{slug}.md``, and the ``is_whitebox`` toggle prose.

Net: -178 LoC in notes/tools.py, -45 LoC across skills/system_prompt
and the wiki doc. The notes tool surface (5 ``@function_tool``s) is
unchanged for the agent.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-25 23:56:22 -07:00
0xallam f8213452ea feat(logging): close audit gaps — SDK records, proxy tracebacks, CLI/docker/posthog
Five gaps from the post-implementation audit, closed:

1. **SDK logger captured.** The openai-agents SDK uses
   ``logging.getLogger("openai.agents")`` for its own lifecycle events
   (Runner.run starts, tool dispatch, model retries, exceptions).
   Previous setup only attached handlers to the ``strix`` root, so
   SDK-internal events were dropped. Tracked-roots tuple now covers
   both, with the same FileHandler/StreamHandler/Filter chain.

2. **Proxy tool exception tracebacks.** Every ``@function_tool`` in
   ``strix/tools/proxy/tools.py`` returns a JSON error to the LLM via
   the ``_err(name, exc)`` helper. The tracebacks were silently
   formatted away — the LLM saw the message, the human reading the
   log saw nothing. ``_err`` now emits ``logger.exception(...)``
   covering all five tools at once.

3. **CLI bootstrap.** ``strix/interface/main.py`` had its module
   ``logger`` removed by the previous commit and was emitting nothing.
   Restored, plus log lines for env validation, docker check, LLM
   warm-up, and image pull (debug for already-present, info for
   pull, exception for failures).

4. **Docker client.** ``strix/runtime/docker_client.py`` had no
   logger. Container creation now logs caps + exposed ports at DEBUG
   and the resulting container id at INFO.

5. **PostHog telemetry.** ``strix/telemetry/posthog.py`` had no
   logger. Now logs send success/failure at DEBUG, version-detection
   failures at DEBUG, and disabled-skip at DEBUG (so the log shows
   when telemetry is off, instead of being silent about it).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-25 23:43:19 -07:00
0xallam 46ff025209 feat(logging): per-scan `{run_dir}/strix.log` with scan/agent context tagging
Every scan now writes a complete log file at ``{run_dir}/strix.log``
captured from the moment ``run_dir`` is resolved through teardown.
Stdlib ``logging`` only — no parallel framework.

New ``strix/telemetry/logging.py``:
  * ``setup_scan_logging(run_dir, debug=)`` attaches a ``FileHandler``
    (DEBUG, all ``strix.*``) plus a ``StreamHandler`` (ERROR by
    default; DEBUG via ``STRIX_DEBUG=1``).
  * ``ContextVar``-backed ``scan_id`` and ``agent_id`` injected by a
    ``Filter`` so every line is auto-tagged across asyncio tasks
    without callers passing them explicitly.
  * Third-party noise (``httpx``, ``litellm``, ``openai``,
    ``anthropic``, ``urllib3``, ``httpcore``) capped at WARNING.
  * Returns a teardown handle for ``finally`` cleanup.

Wiring:
  * ``orchestration/scan.py`` calls ``setup_scan_logging`` once per
    scan after ``run_dir`` resolves; sets scan_id; tears down in
    ``finally``. Adds INFO logs for sandbox bring-up + scan
    start/end.
  * ``orchestration/hooks.py`` sets/clears ``agent_id`` ContextVar in
    ``on_agent_start`` / ``on_agent_end`` and emits INFO for agent
    lifecycle, DEBUG for every tool start/end and LLM call.
  * ``interface/main.py`` drops the ``setLevel(ERROR)`` silencer.

Coverage expanded across ~20 files (orchestration, agents, runtime,
llm, tools, interface, config, skills) with INFO for lifecycle and
DEBUG for verbose detail. Per the system instructions in
``logger.warning(f"…{e}")`` were converted to module logger calls.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-25 23:35:01 -07:00
0xallam 9d7f754b59 feat(tools): python_action — stateless Python execution with proxy helpers
Restores the legacy persistent-IPython tool's *ergonomics* (proxy
helpers pre-bound, structured stdout/stderr/error returns) without the
in-container daemon: each call ships ``strix.tools.proxy._calls`` source
into ``/tmp`` alongside a per-call driver, runs ``python3 -u`` against
it, and parses a sentinel-delimited JSON payload back from stdout. The
driver fetches its own guest token from Caido at ``localhost:48080``
and binds ``list_requests`` / ``view_request`` / ``send_request`` /
``repeat_request`` / ``scope_rules`` to that client; user code runs
inside an ``async def`` wrapper so top-level ``await`` works.

The proxy SDK call sequences live in one file —
``strix/tools/proxy/_calls.py`` — and are reused by both the host-side
``@function_tool`` wrappers (which add JSON serialization for the LLM)
and the in-container kernel (which exposes the bare async functions).
No code duplication; the helper logic itself is host-shipped, so
tweaking the proxy helpers does not require an image rebuild.

Image: a single ``pip install caido-sdk-client`` line so the driver's
``import caido_sdk_client`` resolves. Skill ``tooling/python`` is
always-loaded alongside ``tooling/agent_browser``.

Trade-off accepted: state does not persist across calls (no kernel).
For multi-step workflows the agent combines into one ``code`` block or
writes a script to ``/workspace/scratch/`` and runs via
``exec_command``. If a workflow surfaces that genuinely needs
persistence, the same tool surface migrates to a kernel-backed
executor without changing the LLM contract.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-25 22:58:53 -07:00
0xallam 72d932f6c4 refactor: collapse strix/io/, strix/run_config_factory.py, strix/entry.py
Three top-level files that didn't earn their place:

- ``strix/io/scan_artifacts.py`` had a single consumer (the Tracer);
  collapsing it into ``strix/telemetry/`` puts it next to that consumer.
  ``strix/io/`` is gone.

- ``strix/run_config_factory.py`` held two helpers that didn't earn the
  factoring. ``make_agent_context`` was a 17-line dict-spelling function
  whose argument names were identical to its dict keys — replaced with
  inline dict literals at the two call sites. ``make_run_config`` had
  enough RunConfig assembly logic to justify a helper, but with only
  two callers (root scan + ``create_agent``) inlining is cleaner than
  keeping a top-level file. ``DEFAULT_RETRY`` moves to
  ``strix/llm/retry.py`` next to its other LLM-policy peers; the dead
  ``STRIX_DEFAULT_MAX_TURNS`` constant is dropped.

- ``strix/entry.py`` is a misnomer — it isn't *the* entry point (that's
  ``strix/interface/main.py`` for the CLI), it's the per-scan bring-up
  driver: build the bus, bring up the sandbox, build the root agent +
  child factory, format the scope-context block, register root in bus,
  open SQLiteSession, hand off to ``run_with_continuation``. That all
  lives next to its peers in ``strix/orchestration/`` now, renamed to
  ``scan.py`` so the role is obvious.

No behavior change. Net -125 LoC.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-25 18:54:46 -07:00
0xallam 6bdaa843d9 docs(finish_scan): elevate the active-agent check to a mandatory pre-flight
Audit flagged that legacy ``finish_scan`` had a code-level guard
(``_check_active_agents``) that refused completion if any subagent was
still running or stopping. Restoring it as code would be defensive
mid-stream cancellation we don't actually want — the agent should
choose whether to wait, message, or stop each child.

Lift the responsibility to the prompt instead: docstring now opens
with a numbered pre-flight checklist that requires the agent to
``view_agent_graph`` first and refuses self-permission to call
``finish_scan`` while any peer is in ``running`` / ``waiting`` /
``llm_failed``. The model sees this as part of the tool's schema and
treats it as a hard rule (matches our pattern for similar
constraints).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-25 17:56:20 -07:00
0xallam 25decb0685 chore(orchestration): drop XML wrappers + close remaining audit gaps
Final pass after re-audit. Three sub-specs landed:

**XML simplification** — the legacy XML envelopes were prompt-engineering
ceremony, not parser primitives (the SDK uses native tool-calling). Drop
the verbose wrappers in favor of one-liner labeled headers. Side benefit:
fixes the unescaped-content XML-injection bug the audit caught (peer
content containing ``</content>`` no longer breaks the wrapper).

- ``_format_inter_agent_message``: ``<inter_agent_message><sender>...
  <content>...`` 9-line XML → ``[Message from {name} ({id}) | type=... |
  priority=...]\n{content}``.
- ``_render_completion_report``: ``<agent_completion_report><agent_info>
  ...<results>...`` XML → human-readable structured text with section
  headers and bulleted lists.
- ``inherited_context``: ``<inherited_context_from_parent>...`` →
  ``== Inherited context from parent (background only) ==``.

**MG1: TUI stop-agent uses graceful cancel.** ``tui.py`` was calling
``bus.cancel_descendants`` (hard, ``task.cancel()`` mid-stream) for the
stop-agent button. Switched to ``bus.cancel_descendants_graceful``, which
uses ``RunResultStreaming.cancel(mode="after_turn")`` to let each agent
finish its current turn (and save to session) before honoring the cancel.
The hard path remains in ``entry.py`` for KeyboardInterrupt where
graceful isn't possible.

**MG2: Document hook lock-free stats mutation.** Added a comment in
``hooks.on_llm_start`` explaining why ``warned_85`` / ``warned_final``
are mutated lock-free: SDK serializes ``on_llm_start`` per agent, so this
hook is the sole writer to those keys; ``record_usage`` only writes
disjoint keys (in/out/cached/calls).

**AG3: Auto-load ``coordination/root_agent`` skill for the root.**
Legacy auto-loaded the orchestration-guidance skill for root agents
only. Threaded ``is_root`` through ``render_system_prompt`` →
``_resolve_skills``; root agents now get the skill, children don't.

Skipped (per user direction): whitebox-wiki integration (CG2-4) — the
auto-injection / auto-update of the shared repo wiki was a pre-migration
feature; user opted not to restore it.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-25 17:48:55 -07:00
0xallam f4834cd6f7 feat(orchestration): full parity with legacy harness — 8 gaps closed via SDK natives
Audit found 8 behavioral gaps between post-migration and the legacy
``BaseAgent.agent_loop``. All 8 are now closed using SDK-native
primitives — no custom workarounds, no shadow state machines.

What was broken / different:

- G1: ``inherit_context`` was dead code; children always started fresh.
- G2: TUI user message couldn't interrupt an in-flight LLM/tool turn.
- G3: ``llm_failed`` state never set; hard failures propagated as crashes.
- G4: No graceful ``stop_agent`` tool.
- G5: Parked subagents waited forever (no auto-resume timeout).
- G6: Inter-agent messages used a plain header instead of legacy XML.
- G7: Completion reports used JSON instead of legacy XML.
- G11/G12: Turn counter reset per cycle; budget warnings could re-fire.

What we did:

Bus extensions (``orchestration/bus.py``):
- ``streams`` registry + ``attach_stream`` ctx manager + ``request_interrupt``
  for SDK-native ``RunResultStreaming.cancel(mode="after_turn")``.
- ``mark_llm_failed`` + ``wait_for_user_message`` (filtered: only ``from="user"``
  satisfies; peer messages don't unstick a stuck model).
- ``stopping: set[str]`` for graceful programmatic exit.
- ``cancel_descendants_graceful`` — leaves-first via ``request_interrupt``.
- ``record_usage`` increments ``calls`` unconditionally so it doubles as the
  per-agent-lifetime turn counter (legacy ``state.iteration`` parity).
- ``warned_85`` / ``warned_final`` flags on ``stats_live`` for once-fire
  budget warnings.

Run loop rewrite (``orchestration/run_loop.py``):
- ``Runner.run`` → ``Runner.run_streamed`` with ``bus.attach_stream`` so
  cancel has a target. Catch ``(AgentsException, APIError)`` after retries
  exhaust; in interactive mode call ``mark_llm_failed`` + wait for user.
- ``UserError`` / ``MaxTurnsExceeded`` / ``CancelledError`` propagate.
- Outer loop: ``asyncio.wait_for(bus.wait_for_message, timeout=300)`` for
  interactive subagents (root waits forever). ``TimeoutError`` injects
  ``"Waiting timeout reached. Resuming execution."``.
- Honors ``bus.stopping`` at top of each iteration.

Hooks (``orchestration/hooks.py``):
- Counter source moved from per-cycle ``ctx["turn_count"]`` to
  per-lifetime ``bus.stats_live[agent_id]["calls"]``.
- Warnings guarded by once-flags — exactly-once across all cycles.

Filter (``orchestration/filter.py``):
- Restored legacy ``<inter_agent_message>`` XML envelope with the
  ``<delivery_notice>DO NOT echo back</delivery_notice>`` instruction.

Agents-graph (``tools/agents_graph/tools.py``):
- G1: ``create_agent`` reads ``ctx.turn_input`` (SDK populates it before
  tool execution at ``run_internal/turn_resolution.py:806``). Wraps as
  one ``<inherited_context_from_parent>`` block.
- G7: ``agent_finish`` emits the legacy ``<agent_completion_report>``
  XML. ``child_ctx["task"] = task`` threaded so the report echoes the
  original task.
- G4: New ``stop_agent`` tool — refuses self-stop, refuses already-
  finalized targets, ``cascade=True`` uses ``cancel_descendants_graceful``.

TUI (``interface/tui.py``):
- ``_send_user_message`` schedules ``bus.send`` AND
  ``bus.request_interrupt(target, mode="after_turn")`` — SDK finishes
  current turn cleanly, next cycle picks up the user's message.

Factory (``agents/factory.py``):
- Registered ``stop_agent`` in ``_BASE_TOOLS``.

Out of scope:
- G8 (``[ABORTED BY USER]`` marker) is auto-resolved by G2 — the SDK
  saves the full assistant message before honoring
  ``cancel(mode="after_turn")``, so partial content is preserved in the
  session.

Verified all bus behaviors with a smoke test. Lint at baseline.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-25 17:30:29 -07:00
0xallam 5896f25cec refactor: move `run_loop into strix/orchestration/`
Top-level ``strix/run_loop.py`` was an orphan — it owns the multi-agent
continuation loop, which is exactly the orchestration layer's job.
Moves it into ``strix/orchestration/run_loop.py`` next to the bus,
hooks, and filter — they all glue ``Runner.run`` to bus state.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-25 17:06:17 -07:00