* fix(security): ADR-165 Phase 1 — close all critical CVEs, refresh registry, add CI gate
Closes ADR-165 Phase 1. Both workspaces pass `npm audit --audit-level=critical`.
## Before (2026-06-29)
| Workspace | Critical | High | Moderate | Total |
|-----------|----------|------|----------|-------|
| Root | **1** | 6 | 31 | 38 |
| v3 | **4** | 33 | 57 | 97 |
## After
| Workspace | Critical | High | Moderate | Total |
|-----------|----------|------|----------|-------|
| Root | **0** | 0 | 31 | 31 |
| v3 | **0** | 27 | 58 | 88 |
All 5 critical advisories closed (vitest GHSA-5xrq, handlebars prototype-pollution,
protobufjs constructor-pollution, plus 2 more in v3). 12 of 39 high advisories
closed via overrides; the remaining 27 v3 highs are deeper transitive chains
that would require breaking-change major bumps — flagged for ADR-165 Phase 2.
## Changes
### Root workspace overrides (package.json)
- `vitest`: `^1.0.0` → `^3.2.6` (closes critical GHSA-5xrq CVSS 9.8)
- `hono`: `>=4.11.4` → `>=4.12.25` (closes 6 hono advisories)
- `undici`: `>=7.18.0` → `>=8.5.0` (closes 7 undici advisories — bumps the
stale pin that ADR-165 flagged as still-in-vulnerable-range)
- `vite`: `>=6.4.6` → `>=8.0.16` (closes 2 vite advisories)
- NEW `@grpc/grpc-js`: `>=1.14.4`
- NEW `form-data`: `>=4.0.6`
- NEW `http-proxy-middleware`: `>=3.0.7`
- `@hono/node-server`: `>=1.19.10` → `>=1.19.14`
### v3 workspace overrides (v3/package.json + pnpm.overrides)
- `vitest`: `^4.0.16` → `^4.1.0` (and `@vitest/coverage-v8` matched)
- Top-level + pnpm overrides: `handlebars: >=4.7.9`, `protobufjs: >=8.6.0`
- 27 sub-package `package.json` updated to `vitest ^4.1.0`
### CVE registry refresh (v3/@claude-flow/security/src/CVE-REMEDIATION.ts)
Rewritten from 5 stale Jan-2026 entries to 16 total: 15 fixed, 1 open
(ADR165-OPEN-01 — PII pipeline wiring per ADR-164 §6.1 not yet on
dispatch-layer). `SECURITY_SUMMARY` is now computed dynamically from the
registry; `validateRemediation()` correctly returns `allFixed: false`
with 1 issue. ADR-165 §5 flagged this as THE Phase 2 priority — now closed.
### New CI gate
`.github/workflows/cve-audit.yml`:
- `audit-root` — `npm audit --audit-level=critical` in root, blocking
- `audit-v3` — same in v3, blocking
- `audit-high-report` — warn-only summary on high-severity drift
- Triggers: PR, push to main, daily cron
### ADR-165 §9 evidence ledger addendum
Captures AFTER-remediation `npm audit --json` metadata for both workspaces.
The diff between BEFORE (already in §9) and AFTER makes Phase 1 verifiable.
Also CORRECTED one prior surprise in §9: the `validate-input.ts` in
`mcp-tools/` is NOT a 9-line shim. It's 269 lines of real implementation.
(That was an inaccurate findings note from the initial audit.)
### §7.3 research items resolved
- `protobufjs` v3 chain confirmed gone after override pins
- `handlebars` v3 chain confirmed not user-reachable on the workflow path
(toolchain-only; override sufficient)
- `validate-input.ts` confirmed real implementation, not a shim (registry
entry corrected)
- CORS surface check: no `cors()` / `app.use(cors` call sites — the hono
CORS-wildcard advisory is not exploitable on the current server
- ADR-164 §6.1 PII pipeline NOT wired in current agentbbs dispatch —
recorded as ADR165-OPEN-01 (Phase 3 work)
## Gates (all PASS)
- `npm audit --audit-level=critical` root: exit 0 (was non-zero)
- `npm audit --audit-level=critical` v3: exit 0 (was non-zero)
- vitest suites: 105/109 pass (4 skip-conditional — same as before)
- ADR-112 audit: 352/352 tools with guidance
- business-pods smoke: 11/11 PASS
- agentbbs smoke: 8/8 PASS
- agenticow smoke: 8/8 PASS
- cli build: clean (tsc)
## Phase 2+ deferred
The 27 v3 high-severity advisories that remain are transitive chains with
no patched-in-range version. ADR-165 §6 Phase 2 picks these up after the
`cve-watch.yml` automation in §6 lands (NEW PR — not in scope here).
Co-Authored-By: RuFlo <ruv@ruv.net>
Claude-Session: https://claude.ai/code/session_01WbBa4nccx5aGhXphoHxcni
* chore(lock): regen v3/pnpm-lock.yaml after override updates (PR #2508 CI fix)
PR #2508 added handlebars + protobufjs to v3 overrides + bumped vitest pin,
but v3/pnpm-lock.yaml wasn't regenerated. CI surfaced
ERR_PNPM_LOCKFILE_CONFIG_MISMATCH on every install step.
Same pattern as the previous lockfile-drift fixes on PR #2500 and #2503.
* fix(ci): cve-audit.yml jq-only + regen witness manifests for #1609 marker drift
Two PR #2508 CI failures fixed:
1. Static-regression-guard tripped on cve-audit.yml line 52: the static
YAML strict-parser sees `if high > 0:` inside the `run: |` block as
a YAML block-mapping key indicator. Refactored all 3 inline-python
blocks to use jq (preinstalled on ubuntu-latest) — no embedded
`if x > 0:` lines, so the YAML guard passes.
2. Witness marker drift smoke flagged fix-marker #1609 — the Phase 1
vitest bump (4.0.16 → 4.1.0) drifted the cited marker string in
v3/@claude-flow/aidefence/package.json. Updated `marker` field in
all 3 platform manifests + `desc` to reference ADR-165 Phase 1, then
re-signed via plugins/ruflo-core/scripts/witness/regen.mjs.
Co-Authored-By: RuFlo <ruv@ruv.net>
Several @claude-flow/* packages still pinned vitest to ^1.x or ^2.x.
That range pulls vite <=6.4.1 → esbuild <=0.24.2, which carries
GHSA-67mh-4wv8-2f99 (esbuild dev server exposes arbitrary file reads
via network) — npm audit reports 4 moderate-severity vulnerabilities.
Fix is to bump every workspace package to vitest ^4.0.16 (which pulls
vite >=6.4.2, esbuild >=0.25.0, all clear). Most packages were already
on 4.x; this PR bumps the holdouts:
- @claude-flow/aidefence ^1.1.0 → ^4.0.16
- @claude-flow/browser ^2.0.0 → ^4.0.16
- @claude-flow/codex ^1.4.0 → ^4.0.16
- @claude-flow/plugin-agent-federation ^1.6.0 → ^4.0.16
- @claude-flow/plugin-iot-cognitum ^1.6.0 → ^4.0.16
- @claude-flow/testing peerDep >=1.0.0 → >=4.0.16
The lockfile regenerated cleanly — net 590 lines smaller as the dual
vitest 1.x / 2.x transitive trees collapse into a single 4.x tree.
Republish required for the affected packages to land the fix on npm
(this only updates source + workspace lockfile).
Closes#1609.
Automatic checkpoint created by Claude Code
- Branch: v3
- Timestamp: 2026-01-07T19:04:42Z
- Changes: 19 file(s)
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Updated standard-checkpoint-hooks.sh to accept both JSON and plain paths
- Fixed pre-edit and post-edit functions to detect input format
- Fixed v3 CLI hook flags (-f -> --file, -c -> --command, etc.)
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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