mirror of
https://github.com/mims-harvard/ToolUniverse.git
synced 2026-09-19 07:31:47 +08:00
Shanghua
5de8f4b198
- Add support for new database tools: GBIF, OBIS, WikiPathways, RNAcentral, ENCODE, GTEx, MGnify, GDC - Add optimizer tools and smolagents tool wrapper configs - Improve tool loading validation to filter out schema files and ensure tool names are strings - Update tool count from 713 to 734 tools - Fix tool validation to safely check supports_caching method using getattr - Add save_dir parameter to ToolDiscover tool - Update PyPIPackageInspector to inherit from BaseTool - Add smolagents as optional dependency in pyproject.toml - Simplify UniProt_search documentation - Minor log message improvements in smcp_server
25 lines
689 B
Python
25 lines
689 B
Python
from tooluniverse import ToolUniverse
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def main():
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tu = ToolUniverse()
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tu.load_tools()
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# Example 1: search experiments (type=Experiment)
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res1 = tu.run_one_function({
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"name": "ENCODE_search_experiments",
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"arguments": {"assay_title": "ChIP-seq", "limit": 3}
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})
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print("ENCODE_search_experiments:", res1 if isinstance(res1, dict) else str(res1)[:500])
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# Example 2: list files from ENCODE
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res2 = tu.run_one_function({
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"name": "ENCODE_list_files",
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"arguments": {"file_type": "fastq", "limit": 3}
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})
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print("ENCODE_list_files:", res2 if isinstance(res2, dict) else str(res2)[:500])
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if __name__ == "__main__":
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main()
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