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58 lines
3.8 KiB
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Data Sources
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============
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ToolUniverse integrates with the following scientific sources, AI models, and services. We thank all the organizations and teams behind these valuable resources for making their data and tools publicly available.
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* **ADMET.ai** - `ADMET.ai <https://academic.oup.com/bioinformatics/article/40/7/btae416/7698030>`_
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* **AlphaFold** - `AlphaFold <https://alphafold.ebi.ac.uk/>`_
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* **Azure OpenAI** - `Azure OpenAI <https://azure.microsoft.com/en-us/products/ai-services/openai-service>`_
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* **Boltz** - `Boltz <https://www.biorxiv.org/content/10.1101/2025.06.14.659707v1>`_
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* **ChEBI** - `ChEBI <https://www.ebi.ac.uk/chebi/>`_
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* **ChEMBL** - `ChEMBL <https://www.ebi.ac.uk/chembl/>`_
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* **ChatGPT API** - `ChatGPT API <https://platform.openai.com/>`_
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* **Claude Code** - `Claude Code <https://claude.ai/>`_
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* **ClinicalTrials.gov** - `ClinicalTrials.gov <https://clinicaltrials.gov/>`_
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* **COMPASS** - `COMPASS <https://www.medrxiv.org/content/10.1101/2025.05.01.25326820v1>`_
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* **DailyMed** - `DailyMed <https://dailymed.nlm.nih.gov/>`_
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* **DeepSeek** - `DeepSeek <https://www.deepseek.com/>`_
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* **DepMap** - `DepMap <https://depmap.org/>`_
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* **DrugBank** - `DrugBank <https://go.drugbank.com/>`_
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* **EFO (Experimental Factor Ontology)** - `EFO <https://www.ebi.ac.uk/efo/>`_
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* **EMBL-EBI OLS (Ontology Lookup Service)** - `EMBL-EBI OLS <https://www.ebi.ac.uk/ols/>`_
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* **Enrichr** - `Enrichr <https://maayanlab.cloud/Enrichr/>`_
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* **Ensembl** - `Ensembl <https://ensembl.org/>`_
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* **Europe PMC** - `Europe PMC <https://europepmc.org/>`_
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* **FDA (FAERS)** - `FDA FAERS <https://open.fda.gov/>`_
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* **FDA OpenFDA API** - `FDA OpenFDA API <https://api.fda.gov/>`_
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* **Gene Ontology** - `Gene Ontology <http://geneontology.org/>`_
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* **Gemini** - `Gemini <https://gemini.google.com/>`_
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* **GitHub** - `GitHub <https://github.com/>`_
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* **GPT Codex CLI** - `GPT Codex CLI <https://github.com/openai/codex>`_
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* **GWAS Catalog** - `GWAS Catalog <https://www.ebi.ac.uk/gwas/>`_
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* **Hugging Face** - `Hugging Face <https://huggingface.co/>`_
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* **Human Protein Atlas** - `Human Protein Atlas <https://www.proteinatlas.org/>`_
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* **HumanBase** - `HumanBase <https://hb.flatironinstitute.org/>`_
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* **Immune Compass** - `Immune Compass <https://github.com/compass-ai/immune-compass>`_
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* **KEGG** - `KEGG <https://www.genome.jp/kegg/>`_
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* **Kempner Institute** - `Kempner Institute <https://kempnerinstitute.harvard.edu/>`_
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* **MeSH** - `MeSH <https://www.nlm.nih.gov/mesh/>`_
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* **MedlinePlus** - `MedlinePlus <https://medlineplus.gov/>`_
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* **Monarch Initiative** - `Monarch Initiative <https://monarchinitiative.org/>`_
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* **MyGene.info** - `MyGene.info <https://mygene.info/>`_
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* **NCBI Entrez** - `NCBI Entrez <https://eutils.ncbi.nlm.nih.gov/entrez/eutils/>`_
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* **OpenAlex** - `OpenAlex <https://openalex.org/>`_
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* **OpenTargets** - `OpenTargets <https://www.opentargets.org/>`_
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* **OpenTargets Genetics API** - `OpenTargets Genetics API <https://api.genetics.opentargets.org/>`_
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* **OpenTargets Platform API** - `OpenTargets Platform API <https://api.platform.opentargets.org/>`_
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* **PINNACLE** - `PINNACLE <https://zitniklab.hms.harvard.edu/projects/PINNACLE/>`_
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* **PubChem** - `PubChem <https://pubchem.ncbi.nlm.nih.gov/>`_
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* **PubTator** - `PubTator <https://www.ncbi.nlm.nih.gov/research/pubtator/>`_
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* **PyPI** - `PyPI <https://pypi.org/>`_
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* **Qwen Code** - `Qwen Code <https://qwenlm.github.io/>`_
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* **RCSB PDB** - `RCSB PDB <https://www.rcsb.org/>`_
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* **Reactome** - `Reactome <https://reactome.org/>`_
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* **Semantic Scholar** - `Semantic Scholar <https://www.semanticscholar.org/>`_
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* **Chan Zuckerberg Initiative** - `Chan Zuckerberg Initiative <https://chanzuckerberg.com/>`_
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* **Transcriptformer** - `Transcriptformer <https://chanzuckerberg.com/blog/transcriptformer-model-overview/>`_
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* **UniProt** - `UniProt <https://www.uniprot.org/>`_
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* **USPTO** - `USPTO <https://www.uspto.gov/>`_ |