NydiaChung 92edf78005 feat(java): suppress java stdlib types from references edges (#1603) ...

Adds a _JAVA_BUILTIN_TYPES skip list so ubiquitous java.lang/util/io/time/etc.
type names (String, List, Map, Optional, ...) are not emitted as references
edges (they never resolve to a project node). Mirrors _GO_PREDECLARED_TYPES /
_PYTHON_ANNOTATION_NOISE. Nested user-type generic args still resolve.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

2026-07-06 01:01:53 +01:00

..

always_on

fix(skillgen): host-generic /graphify install guidance (#1530)

2026-06-29 10:01:06 +01:00

extractors

fix(build): don't crash when a node's source_file is the scan root (#1618)

2026-07-03 00:32:24 +01:00

skills

fix(skill): utf-8 encoding in query reference snippets (#1619 A2)

2026-07-03 11:37:22 +01:00

__init__.py

feat: self-improving work-memory — save-result outcomes + graphify reflect (#1441)

2026-06-24 11:43:13 +01:00

__main__.py

fix: windows skill name, opencode plugin separator, doc-corpus report noise (#1635, #1646, #1657)

2026-07-04 22:43:31 +01:00

_minhash.py

perf/fix: replace datasketch with pure-numpy MinHash; memoize detect ignore checks

2026-06-10 15:50:38 +01:00

affected.py

feat(ruby/affected): mixes_in edges for include/extend/prepend + method-bound callers in affected (#1668, #1669)

2026-07-05 11:41:18 +01:00

analyze.py

fix(extract): don't report deferred import() as a file cycle (#1241)

2026-07-05 10:42:09 +01:00

benchmark.py

Honour GRAPHIFY_OUT end-to-end, not just in the path guards (#1423)

2026-06-22 21:15:51 +01:00

build.py

fix(build): don't crash when a node's source_file is the scan root (#1618)

2026-07-03 00:32:24 +01:00

cache.py

fix(detect): incremental correctness for Office sources + long paths, cache word counts (#1649, #1655, #1656)

2026-07-04 22:12:47 +01:00

callflow_html.py

Relativize hyperedge source_file and honour GRAPHIFY_OUT everywhere (#1418, #1423)

2026-06-22 17:02:29 +01:00

cargo_introspect.py

feat(extract): add opt-in --cargo crate dependency extractor

2026-06-11 15:08:36 -06:00

cluster.py

fix(cluster): detect stale community labels on cluster-only re-cluster

2026-07-01 11:52:50 +01:00

command-kilo.md

feat: add Kilo Code support (#512)

2026-06-01 16:05:07 +01:00

dedup.py

fix(dedup): warn on cross-chunk node ID collision to surface silent data loss (#1504)

2026-07-01 10:47:10 +01:00

detect.py

fix(detect): incremental correctness for Office sources + long paths, cache word counts (#1649, #1655, #1656)

2026-07-04 22:12:47 +01:00

diagnostics.py

fix: harden graph JSON loading against corruption (#1536)

2026-07-01 10:47:10 +01:00

export.py

fix(export): guard to_canvas against dangling community members (#1236 follow-up)

2026-07-03 18:34:41 +01:00

extract.py

feat(java): suppress java stdlib types from references edges (#1603)

2026-07-06 01:01:53 +01:00

file_slice.py

Slice oversized text documents so the whole file is extracted (#1369)

2026-06-18 01:55:56 +01:00

global_graph.py

Merge pull request #1207 from nucleusjay/fix-merge-chunks-and-manifest-bugs

2026-06-12 20:15:23 +01:00

google_workspace.py

Harden Google Workspace gws exports (#772)

2026-05-07 20:07:57 +01:00

hooks.py

perf(hooks): eliminate multi-second foreground stalls before the detached launch

2026-07-02 11:50:12 +01:00

ids.py

Unify node-ID normalization into a single source of truth (#1378)

2026-06-18 22:55:44 +01:00

ingest.py

feat: self-improving work-memory — save-result outcomes + graphify reflect (#1441)

2026-06-24 11:43:13 +01:00

llm.py

fix: harden semantic extraction and kill phantom import edges (#1631, #1638, #1632)

2026-07-04 03:12:23 +01:00

manifest_ingest.py

Parse package manifests into canonical package nodes + depends_on edges (#1377)

2026-06-19 10:25:09 +01:00

manifest.py

perf+fix: parallel extraction, faster imports, bug fixes

2026-04-04 18:56:38 +01:00

mcp_ingest.py

fix(ids): node IDs include the full repo-relative path (#1504, #1509)

2026-06-28 16:57:00 +01:00

multigraph_compat.py

feat(multigraph): add runtime compatibility probe (#956)

2026-05-22 13:22:51 +01:00

paths.py

fix(resolve): test mocks no longer erase the real cross-file call graph (#1553)

2026-06-30 16:59:16 +01:00

pg_introspect.py

Fix invalid virtual postgres source_file URI backslashes on Windows (#1672)

2026-07-05 10:42:09 +01:00

prs.py

fix: resolve F821 undefined name 'nx' in prs.py

2026-06-22 22:57:19 +01:00

querylog.py

add query logging to ~/.cache/graphify-queries.log (#1128)

2026-06-03 21:04:01 +01:00

reflect.py

fix(reflect): layout-ordered source resolution for overlay staleness (#1558)

2026-06-30 12:57:33 +01:00

report.py

fix: windows skill name, opencode plugin separator, doc-corpus report noise (#1635, #1646, #1657)

2026-07-04 22:43:31 +01:00

resolver_registry.py

feat(ruby): type-aware member-call resolution via a resolver framework (#1499)

2026-06-29 09:40:22 +01:00

ruby_resolution.py

feat(ruby/affected): mixes_in edges for include/extend/prepend + method-bound callers in affected (#1668, #1669)

2026-07-05 11:41:18 +01:00

scip_ingest.py

feat(multigraph): add runtime compatibility probe (#956)

2026-05-22 13:22:51 +01:00

security.py

Relativize hyperedge source_file and honour GRAPHIFY_OUT everywhere (#1418, #1423)

2026-06-22 17:02:29 +01:00

semantic_cleanup.py

fix(hyperedge): accept members/node_ids alias keys for the member list (#1561)

2026-06-30 16:58:23 +01:00

serve.py

fix: guarantee per-term BFS seed diversity in query (fixes #1445)

2026-07-03 10:14:57 +01:00

skill-agents.md

fix: allow python@ shebang in skill detection (#1586) + merge-graphs mixed types (#1606)

2026-07-02 11:25:51 +01:00

skill-aider.md

fix: allow python@ shebang in skill detection (#1586) + merge-graphs mixed types (#1606)

2026-07-02 11:25:51 +01:00

skill-amp.md

fix: allow python@ shebang in skill detection (#1586) + merge-graphs mixed types (#1606)

2026-07-02 11:25:51 +01:00

skill-claw.md

fix: allow python@ shebang in skill detection (#1586) + merge-graphs mixed types (#1606)

2026-07-02 11:25:51 +01:00

skill-codex.md

fix: allow python@ shebang in skill detection (#1586) + merge-graphs mixed types (#1606)

2026-07-02 11:25:51 +01:00

skill-copilot.md

fix: allow python@ shebang in skill detection (#1586) + merge-graphs mixed types (#1606)

2026-07-02 11:25:51 +01:00

skill-devin.md

fix: allow python@ shebang in skill detection (#1586) + merge-graphs mixed types (#1606)

2026-07-02 11:25:51 +01:00

skill-droid.md

fix: allow python@ shebang in skill detection (#1586) + merge-graphs mixed types (#1606)

2026-07-02 11:25:51 +01:00

skill-kilo.md

fix: allow python@ shebang in skill detection (#1586) + merge-graphs mixed types (#1606)

2026-07-02 11:25:51 +01:00

skill-kiro.md

fix: allow python@ shebang in skill detection (#1586) + merge-graphs mixed types (#1606)

2026-07-02 11:25:51 +01:00

skill-opencode.md

fix: allow python@ shebang in skill detection (#1586) + merge-graphs mixed types (#1606)

2026-07-02 11:25:51 +01:00

skill-pi.md

fix: allow python@ shebang in skill detection (#1586) + merge-graphs mixed types (#1606)

2026-07-02 11:25:51 +01:00

skill-trae.md

fix: allow python@ shebang in skill detection (#1586) + merge-graphs mixed types (#1606)

2026-07-02 11:25:51 +01:00

skill-vscode.md

fix: allow python@ shebang in skill detection (#1586) + merge-graphs mixed types (#1606)

2026-07-02 11:25:51 +01:00

skill-windows.md

fix: windows skill name, opencode plugin separator, doc-corpus report noise (#1635, #1646, #1657)

2026-07-04 22:43:31 +01:00

skill.md

fix: allow python@ shebang in skill detection (#1586) + merge-graphs mixed types (#1606)

2026-07-02 11:25:51 +01:00

symbol_resolution.py

fix(resolve): test mocks no longer erase the real cross-file call graph (#1553)

2026-06-30 16:59:16 +01:00

transcribe.py

Honour GRAPHIFY_OUT end-to-end, not just in the path guards (#1423)

2026-06-22 21:15:51 +01:00

tree_html.py

Harden HTML output against U+2028 XSS + two crash-on-adversarial-input fixes (#1357)

2026-06-17 10:46:19 +01:00

validate.py

Fix: validate_extraction crashes on non-hashable node id / edge endpoint

2026-06-24 08:54:11 +01:00

watch.py

fix(update): reconcile removed and renamed sources

2026-07-03 10:30:27 +01:00

wiki.py

fix(wiki): portable relative markdown links so navigation works outside Obsidian (#1444)

2026-06-27 10:19:15 +01:00