jiangyq9 a16b5bd151 feat(label): add --missing-only flag for incremental community naming (#1481) ...

`graphify label --missing-only` restricts LLM labeling to communities that are
unnamed or still hold a `Community N` placeholder, preserving existing
non-placeholder labels read from .graphify_labels.json and merging new labels over
them. Lets a large graph be relabeled incrementally without re-naming (and paying
for) communities that already have good names.

Ported from PR #1481 by @jiangyq9. This supersedes the earlier #1421 by
@matiasduartee, which proposed the same flag — credit to @matiasduartee for the
original; #1481 is written against the current label signature (post-#1390
max-concurrency/batch-size) and merges clean, where #1421 had drifted.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

2026-06-27 10:19:15 +01:00

..

fixtures

feat(extract): index Metal (.metal) shader files (#1480)

2026-06-27 10:19:15 +01:00

__init__.py

feat: core pipeline

2026-04-04 18:52:44 +01:00

.DS_Store

Release 0.8.46

2026-06-23 13:21:38 +01:00

bench_extract.py

feat: implement parallel AST extraction using ProcessPoolExecutor with benchmarking support

2026-05-02 12:54:08 +05:30

conftest.py

feat(multigraph): add runtime compatibility probe (#956)

2026-05-22 13:22:51 +01:00

test_affected_cli.py

fix node label lookup normalization (#1353)

2026-06-17 10:29:43 +01:00

test_agents_platform.py

feat(install): add cross-framework agents platform (+ skills alias)

2026-06-23 17:26:49 +01:00

test_analyze.py

feat: detect circular import dependencies at file level (#961)

2026-05-30 21:37:47 +01:00

test_anthropic_custom_endpoint.py

feat: custom endpoints via OPENAI_BASE_URL/OPENAI_MODEL and ANTHROPIC_BASE_URL/ANTHROPIC_MODEL (#1273)

2026-06-16 01:41:15 +01:00

test_antigravity_install.py

write antigravity rules and workflows on project-scoped install

2026-06-02 23:48:54 +01:00

test_astro_extraction.py

feat(extract): add .astro support (#850)

2026-05-13 10:07:50 -07:00

test_backend_extras.py

add anthropic extra and fix backend-missing hints for uv tool installs

2026-06-03 00:08:03 +01:00

test_benchmark.py

feat(multigraph): add runtime compatibility probe (#956)

2026-05-22 13:22:51 +01:00

test_build.py

Fix: validate_extraction crashes on non-hashable node id / edge endpoint

2026-06-24 08:54:11 +01:00

test_cache.py

Merge pull request #1260 from teemow/fix/frontmatter-delimiters

2026-06-11 23:22:20 +01:00

test_callflow_html.py

feat(multigraph): add runtime compatibility probe (#956)

2026-05-22 13:22:51 +01:00

test_cargo_introspect.py

feat(extract): add opt-in --cargo crate dependency extractor

2026-06-11 15:08:36 -06:00

test_charmap_encoding.py

fix(llm): force UTF-8 encoding on _call_claude_cli subprocess + loud failure on chunk errors (#906)

2026-05-17 11:32:38 +01:00

test_chunking.py

feat(llm): split and retry chunks that hit max_completion_tokens truncation

2026-04-30 22:08:28 +10:00

test_claude_cli_backend.py

fix: claude-cli backend works headlessly on Windows npm installs

2026-06-11 09:58:39 -04:00

test_claude_md.py

Fix PreToolUse hook for Claude Code v2.1.117+ (Glob|Grep → Bash matcher)

2026-04-28 00:56:54 +01:00

test_cli_export.py

Honour GRAPHIFY_OUT end-to-end, not just in the path guards (#1423)

2026-06-22 21:15:51 +01:00

test_cluster.py

reduce graph update churn and stabilize community IDs

2026-05-12 02:23:51 +03:00

test_codebuddy.py

feat: add CodeBuddy platform support (#1136)

2026-06-07 14:34:13 +01:00

test_confidence.py

v2: confidence scores on INFERRED edges, avg shown in report

2026-04-06 16:06:31 +01:00

test_cpp_preprocess.py

harden ollama metadata egress and cpp path handling (F3, F5)

2026-06-02 22:23:15 +01:00

test_dart.py

feat(extract): SystemVerilog class-level extraction; Dart with-clause mixin fix

2026-06-11 19:52:56 +03:00

test_dedup.py

Stop fuzzy dedup over-merging numbered siblings, cross-file boilerplate, and prefix-divergent labels (#1284, #1243)

2026-06-17 14:21:19 +01:00

test_detect.py

Merge .graphifyignore with .gitignore instead of replacing it (#1363)

2026-06-18 01:15:24 +01:00

test_devin.py

feat: add Devin CLI support (graphify devin install/uninstall) (#1020)

2026-05-26 09:17:18 +01:00

test_dotnet.py

feat(extract): link XAML views to ViewModels and extract binding references (#1473)

2026-06-26 10:23:10 +01:00

test_explain_cli.py

fix path/explain arrow direction and bedrock CLI guard (#846, #849, #853)

2026-05-13 23:19:15 +01:00

test_export.py

fix(export): lay out canvas node cards in the box's sqrt(n)-column grid (#1452)

2026-06-25 12:26:10 +01:00

test_extract_cli.py

fix: anchor extraction cache at --out root so external output leaves the scanned project clean

2026-06-11 14:02:32 +08:00

test_extract.py

fix: resolve Python ClassName.method() qualified calls to class-method nodes (#1446)

2026-06-24 09:09:48 +01:00

test_extraction_spec_ids.py

Unify node-ID normalization into a single source of truth (#1378)

2026-06-18 22:55:44 +01:00

test_falkordb_integration.py

feat: add FalkorDB export backend (#1175)

2026-06-07 15:03:49 +03:00

test_file_node_id_spec.py

relativize symbol node IDs for root-level files to match spec (fixes #1096)

2026-05-31 17:09:30 +01:00

test_file_slice.py

Slice oversized text documents so the whole file is extracted (#1369)

2026-06-18 01:55:56 +01:00

test_global_graph.py

fix(global-graph): rewire edges to deduplicated external nodes (#1250)

2026-06-11 09:36:38 +02:00

test_google_workspace.py

Harden Google Workspace gws exports (#772)

2026-05-07 20:07:57 +01:00

test_hooks.py

Relativize hyperedge source_file and honour GRAPHIFY_OUT everywhere (#1418, #1423)

2026-06-22 17:02:29 +01:00

test_hypergraph.py

Relativize hyperedge source_file and honour GRAPHIFY_OUT everywhere (#1418, #1423)

2026-06-22 17:02:29 +01:00

test_id_normalization_contract.py

Unify node-ID normalization into a single source of truth (#1378)

2026-06-18 22:55:44 +01:00

test_image_vision.py

feat/fix: land PRs #1118 #1110 #1159 #1107 #1103 (graph quality + new features)

2026-06-07 01:20:38 +01:00

test_import_extension_resolution.py

fix(extract): apply resolver fixups to JS/TS dynamic_import handler

2026-05-05 00:07:50 +02:00

test_incremental.py

fix incremental no-cluster graph updates (#1350)

2026-06-17 10:46:08 +01:00

test_ingest.py

feat: self-improving work-memory — save-result outcomes + graphify reflect (#1441)

2026-06-24 11:43:13 +01:00

test_install_references.py

fix: four production bugs — Windows crashes, ghost-merge collision, version probe

2026-06-13 15:13:23 +01:00

test_install_roundtrip.py

feat(skills): progressive-disclosure split for all platforms (generator + drift fence) (#1121)

2026-06-02 20:48:13 +01:00

test_install_strings.py

close the Read-tool graph bypass with a Read/Glob PreToolUse hook

2026-06-03 00:00:33 +01:00

test_install_upgrade.py

fix(install): route kiro install/uninstall through shared progressive helper (#1142)

2026-06-05 22:15:09 +01:00

test_install.py

Install the hermes skill to %LOCALAPPDATA% on Windows (#1403)

2026-06-23 00:18:47 +01:00

test_java_type_resolution.py

Model Java records as type nodes and extract constructor calls (#1373)

2026-06-18 01:18:48 +01:00

test_js_import_resolution.py

fix js workspace import resolution (#1352)

2026-06-17 10:29:47 +01:00

test_label_retry.py

Adaptive split-and-retry for community labeling on parse failure (#1280, #1278)

2026-06-18 22:50:52 +01:00

test_labeling.py

feat(label): add --missing-only flag for incremental community naming (#1481)

2026-06-27 10:19:15 +01:00

test_languages.py

feat(extract): index Metal (.metal) shader files (#1480)

2026-06-27 10:19:15 +01:00

test_llm_backends.py

fix(llm): force non-streaming on OpenAI-compatible calls (#1223)

2026-06-27 10:19:15 +01:00

test_llm_parser.py

fix(claude-cli): eliminate hollow-response loop from system-prompt conflict

2026-05-28 17:44:35 +02:00

test_manifest_ingest.py

Parse package manifests into canonical package nodes + depends_on edges (#1377)

2026-06-19 10:25:09 +01:00

test_mcp_ingest.py

feat: MCP config extractor (.mcp.json, claude_desktop_config.json, mcp.json)

2026-05-26 20:16:41 +01:00

test_minhash.py

perf/fix: replace datasketch with pure-numpy MinHash; memoize detect ignore checks

2026-06-10 15:50:38 +01:00

test_multigraph_compat.py

feat(multigraph): add runtime compatibility probe (#956)

2026-05-22 13:22:51 +01:00

test_multigraph_diagnostics.py

feat(multigraph): add runtime compatibility probe (#956)

2026-05-22 13:22:51 +01:00

test_multilang.py

feat: semantic type-reference edges for Swift, Kotlin, PHP, Rust, and Go (#1015)

2026-05-28 14:46:03 +01:00

test_obsidian_dangling_member.py

fix: obsidian crash, NFC/NFD dedup, JSON data nodes, OpenAI temperature, JSON config detection

2026-06-10 19:31:47 +01:00

test_obsidian_filename_cap.py

cap obsidian/canvas filenames to avoid ENAMETOOLONG on long labels (fixes #1094)

2026-05-31 16:41:18 +01:00

test_office_limits.py

tighten F2 and F3 from review: bounded decompression, ollama DNS + clean error

2026-06-02 22:50:33 +01:00

test_ollama.py

tighten F2 and F3 from review: bounded decompression, ollama DNS + clean error

2026-06-02 22:50:33 +01:00

test_openai_custom_endpoint.py

feat: custom endpoints via OPENAI_BASE_URL/OPENAI_MODEL and ANTHROPIC_BASE_URL/ANTHROPIC_MODEL (#1273)

2026-06-16 01:41:15 +01:00

test_pascal.py

add Pascal regex fallback - extraction works without tree-sitter-pascal

2026-05-09 15:52:17 +01:00

test_path_cli.py

fix path/explain arrow direction and bedrock CLI guard (#846, #849, #853)

2026-05-13 23:19:15 +01:00

test_pg_introspect.py

fix: security hardening, dedup correctness, and large-graph support

2026-06-10 12:45:20 +01:00

test_pipeline.py

v0.4.15: VS Code Copilot Chat, OpenCode/Gemini Windows fixes, .mjs/.ejs, macOS watch, god_nodes degree rename

2026-04-15 23:08:43 +01:00

test_provider_registry.py

validate custom-provider base_url and gate project-local providers (F1)

2026-06-02 22:16:58 +01:00

test_prs.py

add graphify prs: graph-aware PR dashboard with triage, worktrees, conflict detection

2026-05-16 22:36:58 +01:00

test_python_import_resolution.py

feat: add cross-language semantic contexts for Python, JS/TS, C#, and Java (#996)

2026-05-24 20:38:10 +01:00

test_query_cli.py

feat(multigraph): add runtime compatibility probe (#956)

2026-05-22 13:22:51 +01:00

test_querylog.py

add query logging to ~/.cache/graphify-queries.log (#1128)

2026-06-03 21:04:01 +01:00

test_rationale.py

fix: memory-dir gitignore leak, Pass 2 dedup cross-file identical merge, decorated method node ID mismatch (#1047, #1046, #1050)

2026-05-27 22:30:08 +01:00

test_read_hook.py

fix(hooks): match the real file extension in the Read|Glob hook (#1463)

2026-06-25 20:33:00 +01:00

test_reflect.py

fix(reflect): include analysis/labels sidecars in --if-stale freshness check (#1470)

2026-06-26 10:09:52 +01:00

test_report.py

Fix #664: filter thin communities from GRAPH_REPORT.md by default

2026-05-02 18:09:32 +01:00

test_scip_ingest.py

feat(multigraph): add runtime compatibility probe (#956)

2026-05-22 13:22:51 +01:00

test_security.py

Relativize hyperedge source_file and honour GRAPHIFY_OUT everywhere (#1418, #1423)

2026-06-22 17:02:29 +01:00

test_semantic_cleanup.py

feat(multigraph): add runtime compatibility probe (#956)

2026-05-22 13:22:51 +01:00

test_semantic_similarity.py

v2: semantic similarity edges, scored higher in surprising connections

2026-04-06 16:06:31 +01:00

test_serve_http.py

feat(serve): add Streamable HTTP transport to MCP server (#1143)

2026-06-07 00:43:40 +01:00

test_serve.py

fix(serve): show community name in get_community MCP output (#1448)

2026-06-24 21:19:40 +01:00

test_skillgen.py

fix(skill): state up front that no API key is required, with a non-subagent fallback (#1461)

2026-06-25 14:05:34 +01:00

test_swift_cross_file_calls.py

Resolve cross-file Swift class relationships from member calls and constructors (#1356)

2026-06-17 12:08:59 +01:00

test_swift_import_resolution.py

Collapse Swift module imports to one shared node

2026-06-16 03:06:43 +01:00

test_symbol_resolution.py

feat(multigraph): add runtime compatibility probe (#956)

2026-05-22 13:22:51 +01:00

test_terraform.py

revert: remove importorskip now that uv.lock includes tree-sitter-hcl

2026-06-05 21:46:25 +01:00

test_transcribe.py

Remove Anthropic API call from transcribe.py - agent generates Whisper prompt itself

2026-04-10 15:55:22 +01:00

test_ts_inheritance.py

capture TS interface-extends and same-file class heritage (fixes #1095)

2026-05-31 16:47:52 +01:00

test_validate.py

Fix: validate_extraction crashes on non-hashable node id / edge endpoint

2026-06-24 08:54:11 +01:00

test_vue_extraction.py

fix(extract): parse .vue SFC <script> with the right grammar (#1468)

2026-06-26 10:20:53 +01:00

test_watch.py

fix(update): file-aware shrink-guard so removed symbols prune without --force

2026-06-24 11:29:08 +01:00

test_wheel_packaging.py

feat(install): add cross-framework agents platform (+ skills alias)

2026-06-23 17:26:49 +01:00

test_wiki.py

fix(wiki): portable relative markdown links so navigation works outside Obsidian (#1444)

2026-06-27 10:19:15 +01:00