Safi 2d783e569a fix hooks phantom dir on git < 2.31, save_manifest incremental data loss, cohesion rounding, C++ inheritance; add --resolution and --exclude-hubs ...

- hooks.py: drop --path-format=absolute (added git 2.31), validate no newlines in path, anchor relative paths on repo root (#907)
- detect.py: seed save_manifest from existing manifest before loop so incremental callers don't erase untouched file entries (#917)
- cluster.py: drop round(..., 2) from cohesion_score so split threshold 0.05 fires correctly; add resolution param to _partition and cluster; add exclude_hubs_percentile to cluster with majority-vote reattachment (#919)
- report.py: format cohesion with :.2f for display
- __main__.py: wire --resolution and --exclude-hubs into extract and cluster-only commands (#919)
- C++ inheritance already written to disk by analysis agent (#915)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

2026-05-17 23:05:48 +01:00

..

__init__.py

Add --wiki export: agent-crawlable knowledge wiki from graph

2026-04-06 16:06:31 +01:00

__main__.py

fix hooks phantom dir on git < 2.31, save_manifest incremental data loss, cohesion rounding, C++ inheritance; add --resolution and --exclude-hubs

2026-05-17 23:05:48 +01:00

analyze.py

fix(analyze): exclude npm dep-block keys from god-node selection (#905)

2026-05-17 11:32:53 +01:00

benchmark.py

fix MultiGraph crash, hollow LLM response retry, and skill --help (#796, #795, #792)

2026-05-09 21:17:25 +01:00

build.py

v0.8.4: SQL FK/trigger extraction, deletion pruning fixes, community label normalization

2026-05-15 15:31:22 +01:00

cache.py

fix #832 #831 #828 #826 #827: encoding, uv fallback, path scoring, cache, OpenCode trigger

2026-05-12 12:11:03 +01:00

callflow_html.py

feat: add callflow HTML export with Mermaid architecture diagrams

2026-05-09 23:26:01 +01:00

cluster.py

fix hooks phantom dir on git < 2.31, save_manifest incremental data loss, cohesion rounding, C++ inheritance; add --resolution and --exclude-hubs

2026-05-17 23:05:48 +01:00

dedup.py

fix review findings from #898 #895 #899 corrections

2026-05-16 20:20:49 +01:00

detect.py

fix hooks phantom dir on git < 2.31, save_manifest incremental data loss, cohesion rounding, C++ inheritance; add --resolution and --exclude-hubs

2026-05-17 23:05:48 +01:00

export.py

fix MultiGraph crash, hollow LLM response retry, and skill --help (#796, #795, #792)

2026-05-09 21:17:25 +01:00

extract.py

fix Rust cross-crate spurious INFERRED edges: skip scoped_identifier and trait-method blocklist from raw_calls (#908)

2026-05-17 13:12:49 +01:00

global_graph.py

add Ollama backend and cross-project global graph (#729)

2026-05-05 18:36:59 +01:00

google_workspace.py

Harden Google Workspace gws exports (#772)

2026-05-07 20:07:57 +01:00

hooks.py

fix hooks phantom dir on git < 2.31, save_manifest incremental data loss, cohesion rounding, C++ inheritance; add --resolution and --exclude-hubs

2026-05-17 23:05:48 +01:00

ingest.py

security hardening: F-002/F-005/F-007/F-008/F-009/F-010/F-016/F-031/F-035/F-038/PR747-NEW-2

2026-05-07 16:32:26 +01:00

llm.py

add deepseek backend (deepseek-v4-flash, DEEPSEEK_API_KEY)

2026-05-17 11:49:11 +01:00

manifest.py

perf+fix: parallel extraction, faster imports, bug fixes

2026-04-04 18:56:38 +01:00

prs.py

add graphify prs: graph-aware PR dashboard with triage, worktrees, conflict detection

2026-05-16 22:36:58 +01:00

report.py

fix hooks phantom dir on git < 2.31, save_manifest incremental data loss, cohesion rounding, C++ inheritance; add --resolution and --exclude-hubs

2026-05-17 23:05:48 +01:00

security.py

bump version to 0.7.9, update README and CHANGELOG

2026-05-07 12:09:46 +01:00

serve.py

add graphify prs: graph-aware PR dashboard with triage, worktrees, conflict detection

2026-05-16 22:36:58 +01:00

skill-aider.md

v0.8.4: SQL FK/trigger extraction, deletion pruning fixes, community label normalization

2026-05-15 15:31:22 +01:00

skill-claw.md

v0.8.4: SQL FK/trigger extraction, deletion pruning fixes, community label normalization

2026-05-15 15:31:22 +01:00

skill-codex.md

v0.8.4: SQL FK/trigger extraction, deletion pruning fixes, community label normalization

2026-05-15 15:31:22 +01:00

skill-copilot.md

v0.8.4: SQL FK/trigger extraction, deletion pruning fixes, community label normalization

2026-05-15 15:31:22 +01:00

skill-droid.md

v0.8.4: SQL FK/trigger extraction, deletion pruning fixes, community label normalization

2026-05-15 15:31:22 +01:00

skill-kiro.md

v0.8.4: SQL FK/trigger extraction, deletion pruning fixes, community label normalization

2026-05-15 15:31:22 +01:00

skill-opencode.md

v0.8.4: SQL FK/trigger extraction, deletion pruning fixes, community label normalization

2026-05-15 15:31:22 +01:00

skill-pi.md

v0.8.4: SQL FK/trigger extraction, deletion pruning fixes, community label normalization

2026-05-15 15:31:22 +01:00

skill-trae.md

v0.8.4: SQL FK/trigger extraction, deletion pruning fixes, community label normalization

2026-05-15 15:31:22 +01:00

skill-vscode.md

fix MultiGraph crash, hollow LLM response retry, and skill --help (#796, #795, #792)

2026-05-09 21:17:25 +01:00

skill-windows.md

v0.8.4: SQL FK/trigger extraction, deletion pruning fixes, community label normalization

2026-05-15 15:31:22 +01:00

skill.md

v0.8.4: SQL FK/trigger extraction, deletion pruning fixes, community label normalization

2026-05-15 15:31:22 +01:00

transcribe.py

security: add usedforsecurity=False to MD5/SHA1 hashes used for file diffing and filename generation

2026-05-02 14:32:16 +01:00

tree_html.py

fix(tree): escape title, header, and JSON blob in emit_html

2026-04-27 11:55:21 +05:30

validate.py

Add Kimi K2.6 backend, fix phantom god nodes (#598), fix concept file_type (#601)

2026-04-29 08:51:53 +01:00

watch.py

fix #862 #861 #857: skill-windows.md path prefix, sidecar graphifyignore bypass, manifest ast/semantic split

2026-05-14 23:31:14 +01:00

wiki.py

fix MultiGraph crash, hollow LLM response retry, and skill --help (#796, #795, #792)

2026-05-09 21:17:25 +01:00