skills/graphify-labs__graphify
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v0.4.21
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27 Commits

Author SHA1 Message Date
Safi 429e46a665 v0.4.15: VS Code Copilot Chat, OpenCode/Gemini Windows fixes, .mjs/.ejs, macOS watch, god_nodes degree rename 
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-04-15 23:08:43 +01:00
Safi b85184002c v0.4.13: Verilog support, HiDPI hyperedge fix, null label guards, AGENTS.md python3 fix 
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-04-14 09:28:01 +01:00
Safi b00813bcb2 v0.4.11: fix query crash on MultiGraph, NoneType in serve.py, MCP CWD path bug, .graphifyignore subfolder patterns; v0.4.10: Dart, Hermes, 6 CLI commands, PHP improvements 
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-04-13 12:48:47 +01:00
Safi 1fbcaf840f release: v0.4.9 — PHP extractor improvements, Dart, diacritics, Hermes, fixes 
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-04-13 08:39:28 +01:00
Safi 4210de270f Fix watch edge key, claw path, Blade support, WSL MCP docs (0.4.7) 
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-04-12 20:49:24 +01:00
Safi 5ab8eb34c5 fix #261, #249, #266 and bump to 0.4.4 
- watch.py: preserve INFERRED/AMBIGUOUS edges (code<->doc) across rebuilds (#261)
- __main__.py: fix Codex hook - use additionalContext instead of permissionDecision:allow (#249)
- detect.py: skip common lockfiles (package-lock.json, yarn.lock, Cargo.lock etc.) (#266)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-04-12 18:37:54 +01:00
Safi d1808bab8c fix bugs #256, #253, #244, #226, #254 and bump to 0.4.3 
- extract.py: resolve relative JS/TS imports to full-path IDs (fixes 0 import edges on TS codebases) (#256)
- extract.py: resolve relative Python imports to full-path IDs (#256)
- watch.py: merge fresh AST with existing semantic nodes instead of overwriting (#253)
- hooks.py: add python fallback after python3 for Windows; exit 0 if neither found (#244)
- analyze.py: guard stale _src/_tgt hints with node membership check (#226)
- detect.py + extract.py: add .vue and .svelte to CODE_EXTENSIONS and _DISPATCH (#254)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-04-12 12:59:15 +01:00
Safi 8c17230586 cherry-pick PRs #212, #220, #204, #221 into 0.4.2 
- build/validate: accept NetworkX <=3.1 "links" key alongside "edges" (#212)
- __main__: skip version check during install/uninstall, deduplicate paths (#220)
- all file IO: explicit encoding="utf-8" to prevent crashes on Windows CJK locales (#204)
- hooks: add newline="\n" on write to prevent CRLF shebang breakage on Windows (#204)
- export: strip trailing .md from safe_name so "CLAUDE.md" doesn't become "CLAUDE.md.md" (#221)
- report: add Community Hubs navigation block so Obsidian vault stays connected (#221)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-04-11 21:07:39 +01:00
Safi cf5d721bee Add video/audio corpus support with yt-dlp download and Whisper transcription 
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-04-10 15:40:18 +01:00
Safi 9c829d7a2e release 0.3.25: Aider + Copilot CLI, directed graphs, frontmatter cache, graphifyignore parent discovery, MCP fixes 
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-04-10 00:56:22 +01:00
Safi 7ff7bd2e8f v0.3.17: Julia support, smarter chunking, tree-sitter pin, progress output 
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-04-08 22:54:18 +01:00
Safi 1896379283 v0.3.16: NetworkX <3.4 compat, .jsx support, pipx follow-up fix 
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-04-08 22:27:08 +01:00
Safi bd24ddb1d6 fix: hook JSON format, Go pkg scoping, xcassets PDF, cross-file guard, skill file paths (#83, #85, #52, #81) 2026-04-08 19:20:48 +01:00
Safi a78d25d4fc Add ObjC support, C# inheritance, CLI query, symlink support, bug fixes (v0.3.7-0.3.9) 
- Add Objective-C extractor (.m/.mm) with @interface, @implementation, @protocol, imports, calls
- Add C# inheritance extraction via base_list nodes (inherits edges)
- Add --obsidian-dir flag to skill.md and skill-windows.md
- Add graphify query CLI command with --dfs, --budget, --graph flags
- Add follow_symlinks parameter to detect() and collect_files() with cycle detection
- Fix semantic cache relative path resolution (was saving only 4/17 files)
- Fix validate.py missing rationale file_type causing 75 warnings per run
- Add tree-sitter-objc dependency
- Update README with .m/.mm extensions, --obsidian-dir usage, Codex $ skill trigger
- 367 tests passing

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-04-07 20:20:49 +01:00
Safi 3d5da6039a Add Elixir language support (.ex/.exs) 
Extracts defmodule, def/defp, alias/import/require/use, and call graph.
Follows same custom-walk pattern as Zig and PowerShell extractors.
 2026-04-07 12:54:12 +01:00
Safi f6dd049cb0 Add .docx and .xlsx support via optional [office] extra 
python-docx converts .docx to markdown (headings, lists, tables).
openpyxl converts .xlsx sheets to markdown tables. Both are
pre-converted to .md sidecars in graphify-out/converted/ before
semantic extraction - no skill changes needed. Graceful fallback
if [office] not installed: file is skipped with an install hint.
 2026-04-07 12:38:03 +01:00
Safi 9d998cc810 Add Zig and PowerShell language support 2026-04-07 09:56:53 +01:00
Safi f2423bc114 Add .graphifyignore support for excluding files and directories 2026-04-07 09:41:01 +01:00
Safi 148e247662 Fix 6 bugs: hook exit code, token budget, file node detection, duplicate function, atomic cache writes, deleted file tracking 2026-04-06 22:23:55 +01:00
Safi 9eda1558c2 feat: Lua language support 2026-04-06 21:59:38 +01:00
Safi d8b1e82079 fix: 5 skill gaps - graphml usage, manifest timing, graph existence checks, no-viz clarity 
- Add --graphml to Usage table (was implemented but undocumented there)
- Remove early manifest save from --update merge step (Step 9 owns it; saving early meant failed pipelines left manifest ahead of graph)
- query/path/explain now check graph.json exists before running, with clear "run /graphify first" message
- --no-viz: clarify it skips both Obsidian vault and HTML (was contradictory)
 2026-04-06 16:06:31 +01:00
Safi 5db8f7ce39 docs: update surprising connections description, test count 
style: replace all em dashes with hyphens

fix: explain hidden .graphify/ folder in skill output and README

fix: rename .graphify/ to graphify-out/ so output is visible by default
 2026-04-06 16:06:31 +01:00
Safi 81a43f028f feat: 13-language AST support and token benchmark 
Java, C, C++, Ruby, C#, Kotlin, Scala, PHP via tree-sitter (13 total)
benchmark.py measures BFS subgraph tokens vs corpus tokens
5 skill bug fixes (cohesion crash, dead step, missing MCP tool)
 2026-04-04 18:56:38 +01:00
Safi 41e4e3576a security: SSRF protection, HTML escaping, path guards, encoding hardening 
- graphify/security.py (new): centralised security module
    - validate_url(): blocks file://, ftp://, data:, any non-http/https scheme
    - _NoFileRedirectHandler: re-validates redirect targets, blocks file:// redirects
    - safe_fetch(): streams response, 50MB hard cap, non-2xx raises, timeout
    - safe_fetch_text(): safe_fetch + UTF-8 decode with errors=replace
    - validate_graph_path(): resolves path, requires inside .graphify/, base must exist
    - sanitize_label(): strip control chars, cap 256, html.escape() — mirrors
      code-review-graph's _sanitize_name pattern
- graphify/ingest.py: _fetch_html() and _download_binary() now use safe_fetch*;
  ingest() validates URL scheme and wraps network calls in try/except;
  YAML frontmatter: newlines stripped from question before embedding
- graphify/extract.py: all 33 bare .decode() → .decode("utf-8", errors="replace")
  — non-UTF-8 source files degrade gracefully instead of crashing extraction
- graphify/export.py: sanitize_label() on all node labels and edge titles
  before pyvis embeds them in HTML output
- graphify/serve.py: _load_graph() validates graph_path via validate_graph_path()
  and wraps JSONDecodeError with recovery message; sanitize_label() on MCP
  text output
- graphify/detect.py: os.walk(..., followlinks=False) made explicit
- SECURITY.md (new): threat model, mitigations table, reporting process
- tests/test_security.py (new): 20 tests covering all security.py functions
 2026-04-04 18:56:38 +01:00
Safi 0b7460a9e3 perf+fix: parallel extraction, faster imports, bug fixes 
45x faster cluster import, 135x faster detect, parallel subagent extraction,
auto-exclude venvs/caches, suggest_questions fix, manifest fix, install CLI
 2026-04-04 18:56:38 +01:00
Safi e7a03a0539 feat: cache, multi-language extraction, MCP, memory feedback 
call-graph INFERRED edges, multi-language semantic extraction, SHA256 cache,
MCP stdio server with shortest_path, Q&A memory feedback loop
 2026-04-04 18:56:38 +01:00
Safi ce47198be1 feat: Claude Code skill, Obsidian vault, install, tests 
skill.md with full pipeline steps, Obsidian as default output (canvas, tags,
dataview, graph colors), two-command install, 71 tests, .gitignore, deps
 2026-04-04 18:53:43 +01:00