skills/graphify-labs__graphify
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v0.3.21
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28 Commits

Author SHA1 Message Date
Safi f140d4786d Fix install step: try plain pip before --break-system-packages (#126) 
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-04-09 08:40:17 +01:00
Safi 29c639d97d Apply PRs #82 #93 #102 #109: extension drift, click detection, skill coverage, .graphify_python persistence 
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-04-09 08:22:01 +01:00
Safi 11dff7e9b3 release 0.3.18: fix watch .graphifyignore, codex hook, trae link, Korean README, save-result CLI 2026-04-09 08:09:36 +01:00
Safi dd8235e0b5 v0.3.17: Julia support, smarter chunking, tree-sitter pin, progress output 
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-04-08 22:54:18 +01:00
Safi 23d88c55b0 v0.3.16: NetworkX <3.4 compat, .jsx support, pipx follow-up fix 
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-04-08 22:27:08 +01:00
Safi 6a3b4bb39b fix: shebang allowlist validation in all skill files 2026-04-08 19:57:33 +01:00
Safi 2d64c0cd10 fix: Codex PreToolUse hook + --update ghost node pruning (#86, #51) 2026-04-08 19:29:33 +01:00
Safi bd24ddb1d6 fix: hook JSON format, Go pkg scoping, xcassets PDF, cross-file guard, skill file paths (#83, #85, #52, #81) 2026-04-08 19:20:48 +01:00
Safi 92b70ce5f4 fix: sanitize_label double-encoding and --wiki missing from skill (#66, #55) 2026-04-08 09:40:21 +01:00
Safi a78d25d4fc Add ObjC support, C# inheritance, CLI query, symlink support, bug fixes (v0.3.7-0.3.9) 
- Add Objective-C extractor (.m/.mm) with @interface, @implementation, @protocol, imports, calls
- Add C# inheritance extraction via base_list nodes (inherits edges)
- Add --obsidian-dir flag to skill.md and skill-windows.md
- Add graphify query CLI command with --dfs, --budget, --graph flags
- Add follow_symlinks parameter to detect() and collect_files() with cycle detection
- Fix semantic cache relative path resolution (was saving only 4/17 files)
- Fix validate.py missing rationale file_type causing 75 warnings per run
- Add tree-sitter-objc dependency
- Update README with .m/.mm extensions, --obsidian-dir usage, Codex $ skill trigger
- 367 tests passing

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
 2026-04-07 20:20:49 +01:00
Safi 9eda1558c2 feat: Lua language support 2026-04-06 21:59:38 +01:00
Safi 07de9d5c22 fix: use correct Python interpreter for pipx installs 2026-04-06 16:06:31 +01:00
Safi c46a4ebb68 README: fix CI badge to v2, update curl URL, add how it works, graphify claude install section 2026-04-06 16:06:31 +01:00
Safi 317d73f8f7 v2: confidence scores, hyperedges, rationale extraction, git hooks, Claude Code hooks 
- confidence_score required on every edge (INFERRED: 0.4-0.9, EXTRACTED: 1.0, AMBIGUOUS: 0.1-0.3)
- semantically_similar_to edges for non-obvious cross-file conceptual links
- hyperedges for 3+ node group relationships - fixed cache and merge pipeline that was silently dropping them
- check_semantic_cache returns 4-tuple including cached_hyperedges
- extract.py: mine the "why" - module/class/function docstrings and rationale comments (# NOTE: # IMPORTANT: # HACK: # WHY: # RATIONALE: # TODO: # FIXME:) as rationale_for nodes
- skill.md: rationale_for in relation schema, doc files extract design rationale
- obsidian output opt-in (--obsidian flag) - default output is graph.html + graph.json + GRAPH_REPORT.md only
- hooks.py: post-checkout hook added alongside post-commit - graph rebuilds on branch switch
- claude install: writes .claude/settings.json PreToolUse hook on Glob/Grep - Claude checks graph before searching raw files
- README updated with all v2 features
 2026-04-06 16:06:31 +01:00
Safi 3a117c93e8 v2: hypergraph support - hyperedges in graph.json, shaded regions in HTML, report section 2026-04-06 16:06:31 +01:00
Safi 6fa4c7e662 v2: semantic similarity edges, scored higher in surprising connections 2026-04-06 16:06:31 +01:00
Safi dafe6c9f03 v2: confidence scores on INFERRED edges, avg shown in report 2026-04-06 16:06:31 +01:00
Safi 7e3da961a9 v2: fast --update for code-only changes, parallel AST+semantic, graphify claude install 2026-04-06 16:06:31 +01:00
Safi 66f1f40de8 add git commit hook - auto-rebuilds graph after every commit 2026-04-06 16:06:31 +01:00
Safi e2fd4f944e watch: auto-rebuild graph on code changes without LLM, notify on doc/image changes 2026-04-06 16:06:31 +01:00
Safi cb4ec5d39d fix: HTML always generated by default in Step 6, not flag-gated 2026-04-06 16:06:31 +01:00
Safi d8b1e82079 fix: 5 skill gaps - graphml usage, manifest timing, graph existence checks, no-viz clarity 
- Add --graphml to Usage table (was implemented but undocumented there)
- Remove early manifest save from --update merge step (Step 9 owns it; saving early meant failed pipelines left manifest ahead of graph)
- query/path/explain now check graph.json exists before running, with clear "run /graphify first" message
- --no-viz: clarify it skips both Obsidian vault and HTML (was contradictory)
 2026-04-06 16:06:31 +01:00
Safi ef8c2fef50 perf: larger chunks + code-only fast path + timing estimates 
- Semantic extraction chunks: 12-15 → 20-25 files (fewer subagent round trips)
- Code-only corpora skip semantic dispatch entirely (AST covers it)
- Print estimated time before extraction so the wait feels intentional
 2026-04-06 16:06:31 +01:00
Safi 5efcf114ee fix critical install bug, add --graphml to pipeline, update changelog 2026-04-06 16:06:31 +01:00
Safi d4b24d8609 feat: vis.js HTML graph, token reduction benchmark, repo cleanup 
- Replace pyvis with custom vis.js renderer: node size by degree,
  click-to-inspect panel with clickable neighbors, search box,
  community filter, physics clustering by community
- HTML graph generated by default on every run (no --html flag needed)
- Token reduction benchmark auto-runs after every /graphify on corpora >5k words
- Fix 292 edge warnings: silently skip stdlib/external edges in build.py
- Fix build() to merge extractions before building (cross-extraction edges were dropped)
- Add 5 HTML renderer tests (223 total)
- Remove unnecessary files: lib/, tests/eval_attention.py, misplaced eval reports
- Add graphify-out/ and .graphify_*.json to .gitignore
- Bump version to 0.1.4, remove pyvis dependency
- README: token reduction as top-level selling point, vis.js in tech stack,
  graph.html in output listing, correct test count and install command
 2026-04-06 16:06:31 +01:00
Safi 5db8f7ce39 docs: update surprising connections description, test count 
style: replace all em dashes with hyphens

fix: explain hidden .graphify/ folder in skill output and README

fix: rename .graphify/ to graphify-out/ so output is visible by default
 2026-04-06 16:06:31 +01:00
Safi 81a43f028f feat: 13-language AST support and token benchmark 
Java, C, C++, Ruby, C#, Kotlin, Scala, PHP via tree-sitter (13 total)
benchmark.py measures BFS subgraph tokens vs corpus tokens
5 skill bug fixes (cohesion crash, dead step, missing MCP tool)
 2026-04-04 18:56:38 +01:00
Safi 0b7460a9e3 perf+fix: parallel extraction, faster imports, bug fixes 
45x faster cluster import, 135x faster detect, parallel subagent extraction,
auto-exclude venvs/caches, suggest_questions fix, manifest fix, install CLI
 2026-04-04 18:56:38 +01:00