Files
ar9av__obsidian-wiki/scripts/extract-jsonl.py
ar9av 4bf87a8d19 feat(sessions): add session brain; restructure README behind docs/
Two strands of work.

Session brain — a topic graph over raw agent session history, so you can
find the session where something happened instead of remembering its
UUID. Reads every Claude transcript plus the pruned sessions that survive
only as prompts in history.jsonl, clusters them with local TF-IDF and
community detection (no embeddings, no API calls, no new dependencies),
and writes a sidecar at ~/.claude/session-brain/ — the vault is never
touched. Ships five modules, the sessions-* CLI commands, an interactive
graph.html, and the /session-brain and /wiki-sessions skills. This is
retrieval, deliberately distinct from wiki-history-ingest, which distils
sessions into permanent vault pages.

Docs — README.md was 598 lines and put trust-check flags and a 17-row
agent matrix in front of anyone evaluating the project. Cut it to a 129-
line landing page (problem statement, 60-second install, four blocks of
runnable commands, graph screenshot, why-not-a-notes-folder) and move the
reference material into docs/: installation, agents, skills, cli,
configuration, architecture, session-brain, contributing. README_TW.md
mirrors the new structure; docs/ stays English-only for now.

The restructure also closed real drift:

- Ten skills existed but appeared in no reference — session-brain,
  session-search, wiki-dedup, wiki-digest, wiki-import, wiki-context-pack,
  wiki-stage-commit, wiki-switch, vault-skill-factory, and
  obsidian-layout-adjustment.
- SETUP.md listed 12 of 39 skills and still claimed "no scripts, no
  dependencies" despite the pip package. It is now a signpost into docs/.
- Eight config variables were undocumented anywhere, including
  WIKI_STAGED_WRITES, which wiki-setup prompts for and three skills read.
  Added to .env.example and docs/configuration.md.
- sessions-name and a number of CLI flags were missing from the docs.

Two details worth noting. README links are absolute GitHub URLs because
pyproject sets readme = "README.md" as the PyPI long_description, and PyPI
resolves relative hrefs against pypi.org rather than the repo — docs/
links would have 404'd on the package page. And three doc-drift guards
asserted their facts against README.md; since those facts moved rather
than disappeared, the assertions were repointed at the page that now owns
each one instead of padding content back into the README.

Also gitignore /vault/ (a local knowledge vault, not a fixture) and the
packed browser extension.

Co-authored-by: Claude Opus 5 (1M context) <noreply@anthropic.com>
2026-07-30 12:07:48 -07:00

401 lines
13 KiB
Python

#!/usr/bin/env python3
"""Pre-extract Claude Code conversation JSONL files into compact, signal-only JSON.
Raw JSONL files are 80-90% noise: tool_use blocks, thinking blocks, progress events,
and file-history-snapshots. This script strips all of that and writes compact
{turns: [{role, text}]} files that the ingest skill can read directly — reducing
token consumption by 5-10x and allowing 5-10x more conversations per run.
Output layout
-------------
<output_dir>/ default: ~/.claude/extracted/
<project-dir-name>/
<session-uuid>.json one per conversation
Extracted file format
---------------------
{
"session_id": "uuid",
"project": "-Users-name-myapp",
"cwd": "/Users/name/myapp",
"start_ts": "2026-06-01T10:00:00Z", first message timestamp
"end_ts": "2026-06-01T11:30:00Z", last message timestamp
"n_turns": 18, user+assistant turns kept
"n_user_words": 620,
"turns": [
{"role": "user", "text": "..."},
{"role": "assistant", "text": "..."}
]
}
Usage
-----
# Full extraction (all projects, all sessions)
python3 scripts/extract-jsonl.py
# Incremental — only sessions modified since a date (ISO date or datetime)
python3 scripts/extract-jsonl.py --since 2026-06-01
# Skip specific projects (also reads WIKI_SKIP_PROJECTS env var)
python3 scripts/extract-jsonl.py --skip tsg,autom8
# Custom paths
python3 scripts/extract-jsonl.py \\
--history-path /path/to/.claude \\
--output-dir /path/to/extracted
# Preview what would be extracted without writing
python3 scripts/extract-jsonl.py --dry-run --verbose
Pure stdlib, no dependencies.
"""
from __future__ import annotations
import argparse
import glob as globmod
import json
import os
import sys
from datetime import datetime, timezone
from pathlib import Path
# ---------------------------------------------------------------------------
# Constants
# ---------------------------------------------------------------------------
# Truncate very long individual text blocks (assistant text that includes
# e.g. a pasted file read) to keep extracted files reasonable.
MAX_BLOCK_CHARS = 8_000
# ---------------------------------------------------------------------------
# Path helpers
# ---------------------------------------------------------------------------
def canonical(path: str) -> str:
return os.path.abspath(os.path.expanduser(os.path.expandvars(path)))
def default_history_path() -> str:
return canonical("~/.claude")
def default_output_dir(history_path: str) -> str:
return os.path.join(history_path, "extracted")
# ---------------------------------------------------------------------------
# Skip logic
# ---------------------------------------------------------------------------
def skip_patterns(cli_skip: str | None) -> list[str]:
pats: list[str] = []
for raw in (os.environ.get("WIKI_SKIP_PROJECTS", ""), cli_skip or ""):
pats.extend(p.strip() for p in raw.split(",") if p.strip())
return pats
def is_skipped(path: str, patterns: list[str]) -> bool:
return any(p in path for p in patterns)
# ---------------------------------------------------------------------------
# Staleness check
# ---------------------------------------------------------------------------
def needs_extraction(
source_path: str,
out_path: str,
since_ts: float | None,
) -> bool:
"""Return True if the source JSONL should be (re)extracted.
Idempotent staleness check keyed on the output file: (re)extract when the
output is missing or the source is newer than it, so the extractor does not
depend on the caller passing the right --since. --since only narrows the
scan range; it never suppresses extraction of a file with a fresh output.
"""
# A missing output is always (re)extracted, regardless of --since.
if not os.path.exists(out_path):
return True
mtime = os.path.getmtime(source_path)
# --since narrows the scan range: among files that already have an output,
# skip those not modified since the cutoff.
if since_ts is not None and mtime < since_ts:
return False
# Re-extract if the source changed after the output was last written.
return mtime > os.path.getmtime(out_path)
# ---------------------------------------------------------------------------
# JSONL parsing — the signal extraction core
# ---------------------------------------------------------------------------
def _text_from_content(content: str | list) -> str:
"""Return plain text from a message content field.
content is either a bare string (user messages) or a list of typed blocks
(assistant messages). We keep only 'text' blocks and skip tool_use,
thinking, tool_result, image, etc.
"""
if isinstance(content, str):
return content.strip()
if not isinstance(content, list):
return ""
parts: list[str] = []
for block in content:
if not isinstance(block, dict):
continue
if block.get("type") == "text":
text = block.get("text", "").strip()
if text:
parts.append(text[:MAX_BLOCK_CHARS])
return "\n\n".join(parts)
def extract_conversation(jsonl_path: str) -> dict | None:
"""Parse one JSONL conversation file and return the compact representation.
Returns None if the file contains no usable turns (e.g. pure tool sessions).
"""
turns: list[dict] = []
cwd = ""
start_ts = ""
end_ts = ""
session_id = ""
ai_title = ""
git_branch = ""
try:
with open(jsonl_path, encoding="utf-8", errors="replace") as f:
for raw_line in f:
raw_line = raw_line.strip()
if not raw_line:
continue
try:
entry = json.loads(raw_line)
except json.JSONDecodeError:
continue
entry_type = entry.get("type", "")
# Skip noise entries immediately
if entry_type in ("progress", "file-history-snapshot"):
continue
# The rolling auto-generated title is the best summary a session
# has; it repeats throughout the file, so the last one wins.
if entry_type == "ai-title":
ai_title = entry.get("aiTitle", "") or ai_title
continue
# Subagent traffic and injected context are not the user talking.
# Counting them as turns inflates n_user_words and pollutes any
# downstream summary with the agent's own scaffolding.
if entry.get("isSidechain") or entry.get("isMeta"):
continue
ts = entry.get("timestamp", "")
if ts and not start_ts:
start_ts = ts
if ts:
end_ts = ts
if not cwd:
cwd = entry.get("cwd", "")
if not session_id:
session_id = entry.get("sessionId", "")
if not git_branch:
git_branch = entry.get("gitBranch", "") or ""
msg = entry.get("message", {})
if not isinstance(msg, dict):
continue
role = msg.get("role", "")
if role not in ("user", "assistant"):
continue
text = _text_from_content(msg.get("content", ""))
if not text:
continue
# Slash commands, caveats, and hook output arrive as user-role
# strings wrapped in a tag. They are machine boilerplate.
if role == "user" and text.startswith("<"):
continue
turns.append({"role": role, "text": text})
except OSError:
return None
if not turns:
return None
# Derive project dir name from the path
# e.g. ~/.claude/projects/-Users-name-myapp/uuid.jsonl
project = os.path.basename(os.path.dirname(jsonl_path))
if not session_id:
session_id = os.path.splitext(os.path.basename(jsonl_path))[0]
n_user_words = sum(
len(t["text"].split()) for t in turns if t["role"] == "user"
)
return {
"session_id": session_id,
"project": project,
"cwd": cwd,
"git_branch": git_branch,
"ai_title": ai_title,
"start_ts": start_ts,
"end_ts": end_ts,
"n_turns": len(turns),
"n_user_words": n_user_words,
"turns": turns,
}
# ---------------------------------------------------------------------------
# Main extraction loop
# ---------------------------------------------------------------------------
def run(args: argparse.Namespace) -> int:
history_path = canonical(args.history_path)
output_dir = canonical(args.output_dir) if args.output_dir else default_output_dir(history_path)
skips = skip_patterns(args.skip)
since_ts: float | None = None
if args.since:
try:
dt = datetime.fromisoformat(args.since)
if dt.tzinfo is None:
dt = dt.replace(tzinfo=timezone.utc)
since_ts = dt.timestamp()
except ValueError:
print(f"ERROR: --since value '{args.since}' is not a valid ISO date.", file=sys.stderr)
return 1
# Find all conversation JSONL files
pattern = os.path.join(history_path, "projects", "*", "*.jsonl")
all_files = sorted(globmod.glob(pattern))
if not all_files:
print(f"No JSONL files found under {pattern}")
return 0
if not args.dry_run:
os.makedirs(output_dir, exist_ok=True)
stats = {"scanned": 0, "skipped_pattern": 0, "skipped_since": 0,
"skipped_unchanged": 0, "extracted": 0, "empty": 0, "error": 0}
for source_path in all_files:
stats["scanned"] += 1
if is_skipped(source_path, skips):
stats["skipped_pattern"] += 1
if args.verbose:
print(f" SKIP(pattern) {source_path}")
continue
# Derive the output path from the source path (project dir + file stem)
# so the staleness check can compare against the actual output file.
project = os.path.basename(os.path.dirname(source_path))
session_id = os.path.splitext(os.path.basename(source_path))[0]
out_path = os.path.join(output_dir, project, session_id + ".json")
if not needs_extraction(source_path, out_path, since_ts):
stats["skipped_unchanged"] += 1
if args.verbose:
print(f" SKIP(unchanged) {source_path}")
continue
if args.verbose:
print(f" EXTRACT {source_path}")
result = extract_conversation(source_path)
if result is None:
stats["empty"] += 1
if args.verbose:
print(f" -> empty (no usable turns)")
continue
project_dir = os.path.join(output_dir, result["project"])
out_path = os.path.join(project_dir, result["session_id"] + ".json")
if not args.dry_run:
os.makedirs(project_dir, exist_ok=True)
with open(out_path, "w", encoding="utf-8") as f:
json.dump(result, f, ensure_ascii=False, indent=2)
f.write("\n")
stats["extracted"] += 1
if not args.verbose and stats["extracted"] % 25 == 0:
print(f" ... {stats['extracted']} extracted so far")
# Summary
print(
f"\nDone.\n"
f" Scanned: {stats['scanned']}\n"
f" Extracted: {stats['extracted']}\n"
f" Empty (no turns): {stats['empty']}\n"
f" Skipped (pattern):{stats['skipped_pattern']}\n"
f" Skipped (since): {stats['skipped_since']}\n"
f" Skipped (unchanged):{stats['skipped_unchanged']}\n"
f" Output dir: {output_dir if not args.dry_run else '(dry-run, nothing written)'}"
)
return 0
# ---------------------------------------------------------------------------
# CLI
# ---------------------------------------------------------------------------
def main(argv: list[str] | None = None) -> int:
p = argparse.ArgumentParser(
description=__doc__,
formatter_class=argparse.RawDescriptionHelpFormatter,
)
p.add_argument(
"--history-path",
default=default_history_path(),
metavar="PATH",
help="Root of Claude Code data directory (default: ~/.claude)",
)
p.add_argument(
"--output-dir",
default=None,
metavar="PATH",
help="Where to write extracted files (default: <history-path>/extracted/)",
)
p.add_argument(
"--since",
default=None,
metavar="DATE",
help="Only process sessions modified on or after this ISO date (e.g. 2026-06-01)",
)
p.add_argument(
"--skip",
default=None,
metavar="A,B",
help="Comma-separated project substrings to exclude (also reads WIKI_SKIP_PROJECTS env var)",
)
p.add_argument(
"--dry-run",
action="store_true",
help="Show what would be extracted without writing anything",
)
p.add_argument(
"--verbose", "-v",
action="store_true",
help="Print one line per file",
)
args = p.parse_args(argv)
return run(args)
if __name__ == "__main__":
sys.exit(main())